View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12995_high_15 (Length: 295)

Name: NF12995_high_15
Description: NF12995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12995_high_15
NF12995_high_15
[»] chr8 (3 HSPs)
chr8 (186-275)||(27194322-27194411)
chr8 (202-275)||(27209691-27209764)
chr8 (42-137)||(27194450-27194544)


Alignment Details
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 27194411 - 27194322
Alignment:
Q  186 tacggtggaatggaagtacctgatcgccggtgttgcgaagaagaaagtctctatctggagaagagagaatagagtgaacttcgtgagtga 275  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| | ||||||||    
T  27194411 tacggtggaatggaagtacctgatcgccggtgtttcgaagaagaaagtctctatcggaagaagagagaatagagtgaacgttgtgagtga 27194322  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 27209764 - 27209691
Alignment:
Q  202 tacctgatcgccggtgttgcgaagaagaaagtctctatctggagaagagagaatagagtgaacttcgtgagtga 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||    
T  27209764 tacctgatcgccggtgttgcgaagaagaaagtctctatctggagaagagaggagagagtgaacatcgtgagtga 27209691  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 27194544 - 27194450
Alignment:
Q  42 aaatggtagagttttgtatgattcaagaaattactaaaaattatgattcacgaaattaaaaaacatttgatgacattaatctcttaacaatttcat 137  Q
    |||| |||||| ||||| ||| |||||||| |||||||| |||||| |||  ||||||||||| ||||||| |||||| |||| ||| ||||||||    
T  27194544 aaattgtagaggtttgtttgaatcaagaaagtactaaaa-ttatgactcatcaaattaaaaaatatttgatcacattagtctcataataatttcat 27194450  T

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