View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12995_high_21 (Length: 214)
Name: NF12995_high_21
Description: NF12995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12995_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 42950800 - 42950983
Alignment:
| Q |
17 |
tgtcgtttgtgttacttacacccctcacttggatagtaggtatgtaagtatctattttttgtatacatttggattcttgttgcgcataaaataacttttt |
116 |
Q |
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| T |
42950800 |
tgtcgtttgtgttacttacacccctcacttggatagtaggtatgtatgtatctattttttgtatacatttggatttttgttgcgcataaaataacttttt |
42950899 |
T |
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| Q |
117 |
ccatttctaatattttagtatggctaggataattgttttgcgcataaaataactggttttgtgtacctctgtaatgttgtggtg |
200 |
Q |
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| T |
42950900 |
ccatttctaatattttagtatggctaggataattgttttgcgcataaaataactggttttgtgtacctatgtaatgtagtggtg |
42950983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 2904429 - 2904572
Alignment:
| Q |
17 |
tgtcgtttgtgttacttacacccctcacttggatagtaggtatgtaagtat----ctattttttgtatacatttggattcttgttgcgcataaaataact |
112 |
Q |
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| T |
2904429 |
tgtcgattgtgttacttacactcctcacttggatagtaggtatgtatgtatgtatctattttttgtatacatttggattcttgttgcgcataaaataaca |
2904528 |
T |
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| Q |
113 |
ttttccatttctaatattttagtatggctaggataattgttttg |
156 |
Q |
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| T |
2904529 |
ttttcaatttctaatattttagcatggttgggatgattgttttg |
2904572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 23 - 156
Target Start/End: Original strand, 2852403 - 2852540
Alignment:
| Q |
23 |
ttgtgttacttacacccctcacttggatagtaggtatgtaagtat----ctattttttgtatacatttggattcttgttgcgcataaaataactttttcc |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2852403 |
ttgtgttacttacactcctcacttggatagtaggtatgtatgtatgtatctattttttgtatacatttggattcttgttgcgcataaaataacattttca |
2852502 |
T |
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| Q |
119 |
atttctaatattttagtatggctaggataattgttttg |
156 |
Q |
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|||||||||||||||| |||| | |||| ||||||||| |
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| T |
2852503 |
atttctaatattttagcatggttgggatgattgttttg |
2852540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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