View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12995_high_3 (Length: 550)
Name: NF12995_high_3
Description: NF12995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12995_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 42950099 - 42950433
Alignment:
| Q |
18 |
agttatgggcaatagttagattaacatggaaaacttcattgtcgccaagtaaattatatttgtatggaaactatctatatattcataatctatgaattta |
117 |
Q |
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| T |
42950099 |
agttatgggcaatagttagattaacatggaaaacttcattgtcaccaagtaaattatatttgtatggaaactatctatatattcataatctatcaattta |
42950198 |
T |
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| Q |
118 |
aataatggtatggtatagttggtggcatgtgaaacaaaggatattttgtttgatactgttgaagaagatgaaggta-gtggcatgtgaaacataacaccg |
216 |
Q |
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| T |
42950199 |
aataatggtatggtatagttagtgacatgtgaaacaaaggatattttgtttgatactgttgaagaagatgaaggtataaggcatgtgaaacataacaccg |
42950298 |
T |
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| Q |
217 |
ttatcttcccttttcctagcattcgaacactgttatctttcattttcctagcattcgaaaaacttccagcagtccagcaccttcaaggaactttttgttt |
316 |
Q |
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| T |
42950299 |
ttatcttccattttcctagcattcgaacactgttatctttcattttcctagcattcgaaaaacttccagcagtccagcaccttcaaggaactttttgttt |
42950398 |
T |
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| Q |
317 |
ccatgatcatactcctctgtaaccataggatattt |
351 |
Q |
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| T |
42950399 |
ccatgatcatactcctctgtaaccataggatattt |
42950433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 381 - 539
Target Start/End: Original strand, 42950432 - 42950590
Alignment:
| Q |
381 |
ttcggttctgcattctgtaccctttgtcccctagtgttttcatcactgctttgatcatccttcatcatgatcataattattacagccagtaatttattca |
480 |
Q |
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| T |
42950432 |
ttcggttctacattctgtaccctttgtcccctagtgttttcatcactgctttgattgtccttcatcatgatcataattattacagccagtaatttattca |
42950531 |
T |
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| Q |
481 |
gctaaatatgcctttgttcttgaatatgtcaaacttgtttaatttttgttgttggtgat |
539 |
Q |
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| T |
42950532 |
gctaaatatgcctttgttcttgaatatgtcaaacttgtttaatttttgttattggtgat |
42950590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 2851835 - 2852033
Alignment:
| Q |
18 |
agttatgggcaatagttagattaacatggaaaacttcattgtcgccaagtaaattatatttgtatggaaactatctatatattcataatctatgaat-tt |
116 |
Q |
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| T |
2851835 |
agttatgggaaatagttagattaacacggagaacttcattgtcaccaagtaaattatatttgtatggaaacta--tatatattcatagtctaccaatcta |
2851932 |
T |
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| Q |
117 |
aaataatggtatggtatagttggtggcatgt--------gaaacaaaggatattttgtttgatactgttgaagaagatgaaggtagtggcatgtgaaaca |
208 |
Q |
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| T |
2851933 |
aaataatggtatggaatagttagtggcatgtgaaacatagaaacatagggtattttgtttgatattgttgacgaagatgaaggtagtggcatgtgaaaca |
2852032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 2903867 - 2904065
Alignment:
| Q |
18 |
agttatgggcaatagttagattaacatggaaaacttcattgtcgccaagtaaattatatttgtatggaaactatctatatattcataatctatgaat-tt |
116 |
Q |
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| T |
2903867 |
agttatgggaaatagttagattaacacggagaacttcattgtcaccaagtaaattatatttgtatggaaacta--tatatattcatagtctaccaatcta |
2903964 |
T |
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| Q |
117 |
aaataatggtatggtatagttggtggcatgt--------gaaacaaaggatattttgtttgatactgttgaagaagatgaaggtagtggcatgtgaaaca |
208 |
Q |
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| T |
2903965 |
aaataatggtatggaatagttagtggcatgtgaaacatagaaacatagggtattttgtttgatattgttgacgaagatgaaggtagtggcatgtgaaaca |
2904064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 446 - 539
Target Start/End: Original strand, 2852094 - 2852187
Alignment:
| Q |
446 |
catgatcataattattacagccagtaatttattcagctaaatatgcctttgttcttgaatatgtcaaacttgtttaatttttgttgttggtgat |
539 |
Q |
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| T |
2852094 |
catgataataattattacagccagtaatttattcagctaaatatgcctttgttgttgaatatgtcaagcttgtttaatttttgttgttggtgat |
2852187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 446 - 539
Target Start/End: Original strand, 2904126 - 2904219
Alignment:
| Q |
446 |
catgatcataattattacagccagtaatttattcagctaaatatgcctttgttcttgaatatgtcaaacttgtttaatttttgttgttggtgat |
539 |
Q |
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| T |
2904126 |
catgataataattattacagccagtaatttattcagctaaatatgcctttgttgttgaatatgtcaagcttgtttaatttttgttgttggtgat |
2904219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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