View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12995_high_4 (Length: 524)
Name: NF12995_high_4
Description: NF12995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12995_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Complemental strand, 38633303 - 38632803
Alignment:
| Q |
18 |
aattatgaatactaaatatgtgaatcaccaaagagcacttgaatgagatgcttaaggtccaaggtttgaatagaaccctgaaaatgcagcgcaatagtgc |
117 |
Q |
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| T |
38633303 |
aattatgaatactaaatatgtgaatcaccaaagagcacttgaatgagatgcttaaggtccaaggttcgaatagaaccctgaaaatgcagcgcaatagtgc |
38633204 |
T |
|
| Q |
118 |
taaatctcttgtggaaagtggttctatctgactcgagagatttaatatgcgcagttgtgcatagaggatatccgattcacnnnnnnnnnnn-----taca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
38633203 |
taaatctcttgtggaaagtggttctatctgactcgagagatttaatatgtgcagttgtgcatagaggatatccgattcacaaaaaaaaaaaaaaaataca |
38633104 |
T |
|
| Q |
213 |
atcacactcggtacttttcagtttatgttctgttactcattttctggttcctttgattttgtttcccactgtactttactttgtaagcaccaggttgccc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38633103 |
atcacactcggtacttttcagtttatgttctgttactcattttctggttcctttgattttgtttcccactgtactttactttgtaagcaccaggttgccc |
38633004 |
T |
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| Q |
313 |
cattttatcacttttattggtttcttcagcttctcccttatttatttcaacattgttctttttccatttccttgaatcttacatcataagtctatggaag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38633003 |
cattttatcacttttattggtttcttcagcttctcccttatttatttcaacattgttctttttccatttccttgaatcttacatcataagtctatggaag |
38632904 |
T |
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| Q |
413 |
ataccttagggtttttctcatgttcatgattatgacagccaatatttcaacaaactaaagaggagaacagaatgactaaaaaacctgtggtacttgttct |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38632903 |
ataccttagggtttttctcatgttcatgattatgacagccaatatttcaacaaactaaagaggagaacagaatgactaaaaaacctgtggtacttgttct |
38632804 |
T |
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| Q |
513 |
t |
513 |
Q |
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| T |
38632803 |
t |
38632803 |
T |
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