View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12995_high_5 (Length: 474)

Name: NF12995_high_5
Description: NF12995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12995_high_5
NF12995_high_5
[»] chr3 (2 HSPs)
chr3 (18-192)||(348313-348484)
chr3 (307-348)||(22433046-22433087)
[»] chr7 (2 HSPs)
chr7 (45-183)||(43505339-43505469)
chr7 (45-192)||(39071040-39071178)
[»] scaffold0047 (3 HSPs)
scaffold0047 (275-341)||(25548-25614)
scaffold0047 (422-466)||(25422-25466)
scaffold0047 (93-192)||(30189-30282)
[»] scaffold0005 (3 HSPs)
scaffold0005 (275-341)||(10906-10972)
scaffold0005 (422-466)||(11054-11098)
scaffold0005 (93-192)||(6251-6344)
[»] chr4 (3 HSPs)
chr4 (275-341)||(14828737-14828803)
chr4 (422-466)||(14828611-14828655)
chr4 (93-192)||(14833355-14833448)
[»] chr8 (2 HSPs)
chr8 (236-341)||(42125090-42125197)
chr8 (18-126)||(42124875-42124984)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 348313 - 348484
Alignment:
Q  18 ttatttacaaaggtatttgcggttacattgaaattcttgttttccatcattatatatttactaacattctaccactgaatattaatttatttccatttct 117  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  348313 ttatttacaaaggtagttgtggttacattgaaattcttgttttccatcattatatatttactaatattctaccactgaatattaatttatttccatttct 348412  T
Q  118 ttttctttctattcattcattgttgtctttgatagatacgtaatgtgttactcctatcattgtgtgtgataaaac 192  Q
    |||||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  348413 ttttctttctattcattca---ttgtctttgataaatacgtaatgtgttactcctatcattgtgtgtgataaaac 348484  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 22433046 - 22433087
Alignment:
Q  307 aaaattattcaaacaatctctaattacttacaagacaagatg 348  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  22433046 aaaattattcaaacaatctctaattacttagaagacaagatg 22433087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 183
Target Start/End: Complemental strand, 43505469 - 43505339
Alignment:
Q  45 ttgaaattcttgttttccatcattatatatttactaacattctaccactgaatattaatttatttccatttctttttctttctattcattcattgttgtc 144  Q
    |||||||| |||||||||||||||||  | |  |||||||||||||||||||| ||||||||| |  ||||||||||||||||||||||      |||||    
T  43505469 ttgaaatttttgttttccatcattattcact--ctaacattctaccactgaatgttaatttatctttatttctttttctttctattcat------ttgtc 43505378  T
Q  145 tttgatagatacgtaatgtgttactcctatcattgtgtg 183  Q
    |||||||| |||||||| | ||||||||| |||||||||    
T  43505377 tttgataggtacgtaatattttactcctaccattgtgtg 43505339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 192
Target Start/End: Complemental strand, 39071178 - 39071040
Alignment:
Q  45 ttgaaattcttgttttccatcattatatatttactaacattctaccactgaatattaatttatttccatttctttttctttctattcattcattgttgtc 144  Q
    |||||||| |||||||||||||||||  | |  ||||||||||||||| |||| ||||||||| || ||||||||||| ||||||||||      ||||     
T  39071178 ttgaaatttttgttttccatcattattcact--ctaacattctaccaccgaatgttaatttatctctatttctttttc-ttctattcat------ttgtt 39071088  T
Q  145 tttgatagatacgtaatgtgttactcctatcattgtgtgtgataaaac 192  Q
    ||| |||| |||||||| |  |||||||| |||| |||||||||||||    
T  39071087 ttttataggtacgtaatattatactcctaccattttgtgtgataaaac 39071040  T

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Target: scaffold0047 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 25614 - 25548
Alignment:
Q  275 taaacttataaaattgactgtgcatgcaccaaaaaattattcaaacaatctctaattacttacaaga 341  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  25614 taaacttataaaattgattgtgcatgcacctaaaaattgttcaaacaatctctaattacttataaga 25548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 466
Target Start/End: Complemental strand, 25466 - 25422
Alignment:
Q  422 caattacttacgatgtgatcaatgtacatgttccttaatattctt 466  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||    
T  25466 caattacttacaatgtgatcaatgtacatgtcccttaatattctt 25422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 192
Target Start/End: Complemental strand, 30282 - 30189
Alignment:
Q  93 tgaatattaatttatttcc-atttctttttctttctattcattcattgttgtctttgatagatacgtaatgtgttactcctatcattgtgtgtgataaaa 191  Q
    ||||| ||||||||| ||| |||||||||| ||||||||||||       ||||||||| | |||||||| |||||||| ||||  ||||||||||||||    
T  30282 tgaatgttaatttatctcccatttctttttatttctattcatt-------gtctttgatgggtacgtaatatgttactcttatcgatgtgtgtgataaaa 30190  T

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Target: scaffold0005 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 10906 - 10972
Alignment:
Q  275 taaacttataaaattgactgtgcatgcaccaaaaaattattcaaacaatctctaattacttacaaga 341  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  10906 taaacttataaaattgattgtgcatgcacctaaaaattgttcaaacaatctctaattacttataaga 10972  T

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Target: scaffold0005; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 466
Target Start/End: Original strand, 11054 - 11098
Alignment:
Q  422 caattacttacgatgtgatcaatgtacatgttccttaatattctt 466  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||    
T  11054 caattacttacaatgtgatcaatgtacatgtcccttaatattctt 11098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 192
Target Start/End: Original strand, 6251 - 6344
Alignment:
Q  93 tgaatattaatttatttcc-atttctttttctttctattcattcattgttgtctttgatagatacgtaatgtgttactcctatcattgtgtgtgataaaa 191  Q
    ||||| ||||||||| ||| |||||||||| ||||||||||||       ||||||||| | |||||||| |||||||| ||||  ||||||||||||||    
T  6251 tgaatgttaatttatctcccatttctttttatttctattcatt-------gtctttgatgggtacgtaatatgttactcttatcgatgtgtgtgataaaa 6343  T

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Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 14828803 - 14828737
Alignment:
Q  275 taaacttataaaattgactgtgcatgcaccaaaaaattattcaaacaatctctaattacttacaaga 341  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  14828803 taaacttataaaattgattgtgcatgcacctaaaaattgttcaaacaatctctaattacttataaga 14828737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 466
Target Start/End: Complemental strand, 14828655 - 14828611
Alignment:
Q  422 caattacttacgatgtgatcaatgtacatgttccttaatattctt 466  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||    
T  14828655 caattacttacaatgtgatcaatgtacatgtcccttaatattctt 14828611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 192
Target Start/End: Complemental strand, 14833448 - 14833355
Alignment:
Q  93 tgaatattaatttatttcc-atttctttttctttctattcattcattgttgtctttgatagatacgtaatgtgttactcctatcattgtgtgtgataaaa 191  Q
    ||||| ||||||||| ||| |||||||||| ||||||||||||       ||||||||| | |||||||| |||||||| ||||  ||||||||||||||    
T  14833448 tgaatgttaatttatctcccatttctttttatttctattcatt-------gtctttgatgggtacgtaatatgttactcttatcgatgtgtgtgataaaa 14833356  T

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Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 236 - 341
Target Start/End: Original strand, 42125090 - 42125197
Alignment:
Q  236 aaaagtttaggcgagttgagcatttttcttgatctacta----taaacttataaaattgactgtgcatgcaccaaaaaattattcaaacaatctctaatt 331  Q
    |||| |||||| |||||||||||||| ||||||||||||    | |||||| |||||||| |||||||||||| || ||||||||||||||||||||| |    
T  42125090 aaaaatttaggtgagttgagcatttt-cttgatctactaataatgaacttaaaaaattgattgtgcatgcacctaagaattattcaaacaatctctaa-t 42125187  T
Q  332 acttacaaga 341  Q
    ||||||||||    
T  42125188 acttacaaga 42125197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 42124875 - 42124984
Alignment:
Q  18 ttatttacaaaggtatttgcggttacattgaaattcttgt-tttccatcattatatatttactaacattctaccactgaatattaatttat-ttccattt 115  Q
    ||||||||||||||  ||| |||||||||||||||  ||| ||| |||| |||| || |   |||||||||||||| |||| ||||||||| | ||||||    
T  42124875 ttatttacaaaggtggttgtggttacattgaaatttgtgtgttttcatcgttatttactct-taacattctaccacggaatgttaatttatctcccattt 42124973  T
Q  116 ctttttctttc 126  Q
    |||||||||||    
T  42124974 ctttttctttc 42124984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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