View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12995_low_1 (Length: 702)
Name: NF12995_low_1
Description: NF12995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12995_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 163 - 695
Target Start/End: Complemental strand, 2665720 - 2665172
Alignment:
| Q |
163 |
ctggttcacacactactagaaactcacgcttttttctgcggaattacccgtggattttggtgaaaattccgcaagaaaccgttcaatgaggtagaaacga |
262 |
Q |
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| T |
2665720 |
ctggttcacacactactagaaactctcgcttttt-ctgcggaattacccgtggactttggtgaaaattccgcaggaaactgttgaatgaggtagatacaa |
2665622 |
T |
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| Q |
263 |
aagtgaccaatttgttttgttttggtgnnnnnnn-tatttgttatgtgaatgatgcacatagtcaaaccatgtcacttattttggtccagagagagtatt |
361 |
Q |
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| T |
2665621 |
aagtggccaatatgttttgttttggtgaaaaaaaatatttgatatgcgaatgatgcacatagtcagaccatgtcacttattttggaccaaagcgagtgtt |
2665522 |
T |
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| Q |
362 |
g----------------ctaaaaatgataaggcaaagctttcaactatttttaaaaggtttatagaagacaaatcctttatgaatgctgtaaatttgagt |
445 |
Q |
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| T |
2665521 |
ataaatacacttttttactaaaaatgataaggttaagctttcaactatttttaaaaggtttatagaagacaaatcctttatgaatgctgtaaatttgagt |
2665422 |
T |
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| Q |
446 |
tactatcttgtaaatattgagttaattaaccatttgttgctgttgttgaatgattggtccttgatcaattaaattaaattaaatatacaggtatttgctg |
545 |
Q |
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| T |
2665421 |
tactatcttgtaaatattgagttaattaaccatttgttgctgttgttgaatgattggtccttgatcaattaaattaaattaaatatacaggtatttgctg |
2665322 |
T |
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| Q |
546 |
aggttatagggacatatttattggtatttgttgggagtggggctgctgctatgaattcaattgatgaaaacaaagtctcaaaattgggagcttcacttgc |
645 |
Q |
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| T |
2665321 |
aggttatagggacatatttattggtatttgttgggagtggggctgctgctatgaattcaattgatgaaaacaaagtctcaaaattgggagcttcacttgc |
2665222 |
T |
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| Q |
646 |
aggtggattcattgttactgttatgatttatgctattggacacatctctg |
695 |
Q |
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| T |
2665221 |
aggtggattcattgttactgttatgatttatgctattggacacatctctg |
2665172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 2665844 - 2665723
Alignment:
| Q |
19 |
tgagagacttatatgttatagttttattctctttccaagtatcatcatctaatgtttcaaaaactggaccactagcaagacttaca--tgttatagtttt |
116 |
Q |
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| T |
2665844 |
tgagagacttatatgttatagttttaatctctttccaagtatcagcatctaatgtttcaaaaactgaaccactagcaagacttacatgtgttatagtttt |
2665745 |
T |
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| Q |
117 |
aactgttttaaactgttcgaac |
138 |
Q |
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| T |
2665744 |
aactgttttaaactgttcgaac |
2665723 |
T |
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