View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12995_low_19 (Length: 246)
Name: NF12995_low_19
Description: NF12995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12995_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 10667697 - 10667470
Alignment:
| Q |
1 |
tccatttcaaattttgctgacaattgcttttgaagcctagtaatttcttctgcatcatctcttgtaataatcatgtcatctgcatatattattagagttg |
100 |
Q |
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| T |
10667697 |
tccatttcaaattttgttgacaattgcttttgaagcctagtaatttcttctgcatcatctcttgtaataatcatgtcatctgcatatattattagagttg |
10667598 |
T |
|
| Q |
101 |
tcacctttccccttcgatgatttagaaaaagagtatgatcagagtttcttttttgaaacccatactttttcatcgttgaactgaaatgacaaaaccatgt |
200 |
Q |
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| T |
10667597 |
tcacctttccccctcgatgatttagaaaaagagtatgatcatagtttcttttttgaaacccatactttttcatcgttgaactgaaattaccaaaccatgt |
10667498 |
T |
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| Q |
201 |
tcgagatgactgtttgaatgcatataga |
228 |
Q |
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|| || ||||| |||||||||||||||| |
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| T |
10667497 |
tctaggtgactctttgaatgcatataga |
10667470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 173
Target Start/End: Original strand, 523407 - 523559
Alignment:
| Q |
21 |
caattgcttttgaagcctagtaatttcttctgcatcatctcttgtaataatcatgtcatctgcatatattattagagttgtcacctttccccttcgatga |
120 |
Q |
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| T |
523407 |
caattgctcttggagtcttgaaatttcttccatatcatcccctgtaatgatcatgtcatccacatatattattaaggctgttacctttcccaaacggtgt |
523506 |
T |
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| Q |
121 |
tttagaaaaagagtatgatcagagtttcttttttgaaacccatactttttcat |
173 |
Q |
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| T |
523507 |
ttcaaaaatagagtatggtcagaattactttgttgaaaaccatactttctcat |
523559 |
T |
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