View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12995_low_22 (Length: 205)
Name: NF12995_low_22
Description: NF12995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12995_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 8091197 - 8091365
Alignment:
| Q |
18 |
gcatcacgcccgaccattcttcctccaaatatgagggacacactgtataaaggtttgcccaataatattaagaatgcccttccttcgcggctgcaaaatg |
117 |
Q |
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| T |
8091197 |
gcatcacgcccgaccattcttcctccaaatatgagggacacactttataaaggtttgcccaataatattaagaatgcccttccttcgcggctgcaaaatg |
8091296 |
T |
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| Q |
118 |
atgatgtcatgaaagaggtaaatatcacttctcaccgtgttaactattagaaaaagttgaaataacaac |
186 |
Q |
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| T |
8091297 |
atgatgtcatgaaagaggtaaatatcacttctcaccgtgttaactattagaaaaagttgaaataacaac |
8091365 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 53171562 - 53171639
Alignment:
| Q |
36 |
cttcctccaaatatgagggacacactgtataaaggtttgcccaataatattaagaatgcccttccttcgcggctgcaa |
113 |
Q |
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| T |
53171562 |
cttcctccaaatacgagggacacattatatcaaggtttgccaaacagtattaagagtgcccttccatctcggttgcaa |
53171639 |
T |
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