View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12995_low_6 (Length: 411)
Name: NF12995_low_6
Description: NF12995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12995_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 15 - 394
Target Start/End: Original strand, 2623825 - 2624207
Alignment:
| Q |
15 |
tatgggtgaagatgtgacatcctaactcacatgtatgattgnnnnnnng---gtccaaggtaatgatccgcaggctcccttgaaaatttcaaacagtttc |
111 |
Q |
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| T |
2623825 |
tatgggtgaagatgtgacatcctaactcacttgtatgattttttttttttttgtccaaggtaataatcggcaggctcccttgaaaatttcaaacagtttc |
2623924 |
T |
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| Q |
112 |
taaccattaaattggtctttattttggaaactttgtttatattattttannnnnnncttgtttctaacatgcagagtgttaaactagagttgagtgcaga |
211 |
Q |
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| T |
2623925 |
taaccattaaattggtctttattttggaaactttgtttatattattttatttttt-cttgtttctaacatgcagagtgttaaactagagttgagtgcaga |
2624023 |
T |
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| Q |
212 |
caac-gtgttggtttcctctctgacatatcacgagtcctcagagaaaatagtcttgttattgtacgagcattcataaacttgttctctagtttagtcttt |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624024 |
caacagtgttggtttcctctctgacatatcacgagtcctcagagaaaatagtcttgttattgtacgagcattcataaacttgttctctagtttagtcttt |
2624123 |
T |
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| Q |
311 |
tggagaaatttcattctcatggtctcaatcaatggacttagataaacatatatgtcgtatcttggttgtcttagacccaaaatc |
394 |
Q |
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| T |
2624124 |
tggagaaatttcattctcatggtctcaatcaatggacttagataaacatatatgtcgtatcttggttgtcttagacccaaaatc |
2624207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 368
Target Start/End: Complemental strand, 6186267 - 6186234
Alignment:
| Q |
335 |
tcaatcaatggacttagataaacatatatgtcgt |
368 |
Q |
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| T |
6186267 |
tcaatcaatggacttagataaacatctatgtcgt |
6186234 |
T |
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