View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12995_low_7 (Length: 407)
Name: NF12995_low_7
Description: NF12995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12995_low_7 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 5084511 - 5084172
Alignment:
| Q |
17 |
atatcagaaattatatgcacatacggtattgatgttcgactttgtgtgttggaaacattttggatccttacattatatagcaactttagttgactgtgtt |
116 |
Q |
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| T |
5084511 |
atatcagaaattatatgcacatacggtattgatgttcgactttgtgtgttggaaacattttggatcattacattatatagcaactttagttgactgtgtt |
5084412 |
T |
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| Q |
117 |
ttcttgtgcaacaaggtgggaagacacttagtcacgcataactatacacttttaattttgaagg--nnnnnnnntaaacataagcctgtgtatattaata |
214 |
Q |
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| T |
5084411 |
ttcttgtgcaacaaggtgggaagacacttagtcacgcataactatacacttttaattttgaaggaaaaaataaataaacataagcctgtgtatattaata |
5084312 |
T |
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| Q |
215 |
ttatatataatatcatcatcatcagtgcttagactcatgcatttaatatcttattgaaaatggccaaactatacacttgcgactcatgcctctgcattct |
314 |
Q |
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| T |
5084311 |
ttatatataatatcatcatcatcagtgcttagactcatgcatataatatcgtattgaaaatggccaagttatactcttttcactcttgcctctgtattct |
5084212 |
T |
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| Q |
315 |
ctctgtatcactctactattacttcttcacttgcttagct |
354 |
Q |
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| T |
5084211 |
ctctacttcactctattattatttcttcacttgcttagct |
5084172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 5110858 - 5110907
Alignment:
| Q |
310 |
attctctctgtatcactctactattacttcttcacttgcttagctttgat |
359 |
Q |
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| T |
5110858 |
attctctctgcctcactctattattacctcttcacttgcttagctatgat |
5110907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 14427934 - 14427904
Alignment:
| Q |
377 |
taaccaccgatgaattttcacttcttgcatt |
407 |
Q |
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| T |
14427934 |
taaccaccgatgaattttcacttcttgcatt |
14427904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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