View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12995_low_8 (Length: 399)
Name: NF12995_low_8
Description: NF12995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12995_low_8 |
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| [»] chr2 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 31 - 399
Target Start/End: Original strand, 5083770 - 5084138
Alignment:
| Q |
31 |
atccaagtgttgaagttttgataactctcctatccttgaaggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctcttcaactga |
130 |
Q |
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|||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |
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| T |
5083770 |
atccaattgttgaagttttgataagtcccctatccttgaaggaatttctccaacaaaatcattgttgctcaaattcaacaatttcaatctcttcaactga |
5083869 |
T |
|
| Q |
131 |
agtaactcatgtggtaactcaccatggaaactattgcgatgtagatcaagaacagcaaggaaagaaagatttcccaattgaggagaaattgtaccttcaa |
230 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
5083870 |
agtaactcatgtggtaactcaccatggaaactatttccttgtagatcaagaaatacaaggaaagagagatttcccaattgaggggaaattgtaccttcaa |
5083969 |
T |
|
| Q |
231 |
ggtacatattactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagtagaagagga |
330 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5083970 |
ggtccatgttactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagtagaagagga |
5084069 |
T |
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| Q |
331 |
aattgaccaattactaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaa |
399 |
Q |
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| T |
5084070 |
aattgaccaatttctaagcatatgataaggatctaaggtaattgaggatttgaatgcaagaagtgaaaa |
5084138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 28 - 395
Target Start/End: Complemental strand, 5111304 - 5110937
Alignment:
| Q |
28 |
aagatccaagtgttgaagttttgataactctcctatccttgaaggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctcttcaac |
127 |
Q |
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||||||||| || |||||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5111304 |
aagatccaaatgatgaagttttgctaagtcccctatccttgaaggaatttctccaacaaaatcattgtcactcaaatccaaccatttcaatctcttcaac |
5111205 |
T |
|
| Q |
128 |
tgaagtaactcatgtggtaactcaccatggaaactattgcgatgtagatcaagaacagcaaggaaagaaagatttcccaattgaggagaaattgtacctt |
227 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5111204 |
tgaagtaactcatgtggtaactcaccatagaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggagaaattgtacctt |
5111105 |
T |
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| Q |
228 |
caaggtacatattactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagtagaaga |
327 |
Q |
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|||||| ||| ||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5111104 |
caaggtccatgttattaagatccaatgcattcactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagtagaaga |
5111005 |
T |
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| Q |
328 |
ggaaattgaccaattactaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtg |
395 |
Q |
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| T |
5111004 |
ggaaattgaccaattactaagaatatcataagggtctaaggtaattgaggatttgaatgcaagaagtg |
5110937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 399
Target Start/End: Complemental strand, 5094316 - 5093930
Alignment:
| Q |
13 |
aatattattatggccaagatccaagtgttgaagttttgataactctcctatccttgaaggaatttctccaacaaaatcattgttactcaaatccaaccat |
112 |
Q |
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||||||||||| || || |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| |||| || |
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| T |
5094316 |
aatattattatagctaatatccaattgttgaagttttgataactcccctatccttgaaggaatttctccaacaaaatcattgttgcttaaattcaacaat |
5094217 |
T |
|
| Q |
113 |
ttcaatctcttcaactgaagtaactcatgtggtaactcaccatggaaactattgcgatgtagatcaagaacagcaaggaaagaaagatttcccaattgag |
212 |
Q |
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| T |
5094216 |
ttcaatcttttcaactgaagcaactcatgtggtaactcaccatggaaactattgccctgtaaatcaagaacaataaggaaagaaagatttcccaattgag |
5094117 |
T |
|
| Q |
213 |
gagaaattgtaccttcaaggtacatattactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaa |
312 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
5094116 |
gagaaattgtaccttcaaggcccatgctactaagattcaatgcatttactcttccatggtgttcatcacaagtaacaccaacccaattgcatgaagacaa |
5094017 |
T |
|
| Q |
313 |
agaagaagtagaagaggaaattgaccaattactaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaa |
399 |
Q |
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| T |
5094016 |
agaagaagtagaagaggaaattgaccaattactaagaatatcataagggtctaaggttattgaggatttgaatgcaagaagtgaaaa |
5093930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 71 - 399
Target Start/End: Original strand, 14427589 - 14427920
Alignment:
| Q |
71 |
ggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctctt---caactgaagtaactcatgtggtaactcaccatggaaactattgc |
167 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| ||||||||| || ||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
14427589 |
ggaatttctccaacaaaatcattgttgctcaaatccaacattttcaatctattatgcaattgaaataactcatgtggtaactcaccatggaaactattgc |
14427688 |
T |
|
| Q |
168 |
gatgtagatcaagaacagcaaggaaagaaagatttcccaattgaggagaaattgtaccttcaaggtacatattactaagattcaatgcatttactcttcc |
267 |
Q |
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|||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
14427689 |
catgtagatcaagaacaacaaggaaagagagatttcctaattgaggagaaatgttaccttcaaggcccatgttactaagattcaatgcatttactcttcc |
14427788 |
T |
|
| Q |
268 |
atgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagtagaagaggaaattgaccaattactaagcatatgataagggtctaag |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||| |
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| T |
14427789 |
atgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagcagaagtggaaattgaccaattactaagaatatgataaggatctaag |
14427888 |
T |
|
| Q |
368 |
gtaattgatgatttgaatgcaagaagtgaaaa |
399 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |
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| T |
14427889 |
gtaattgaggatttgaatgcaagaagtgaaaa |
14427920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 222 - 399
Target Start/End: Complemental strand, 16872553 - 16872376
Alignment:
| Q |
222 |
taccttcaaggtacatattactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagt |
321 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||| ||||||| |
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| T |
16872553 |
taccttcaagtcccatattactaagattcaatgcctttactcttccatgatgctcatcacaagtgacaccaacccaattacatgatgaga---aagaagt |
16872457 |
T |
|
| Q |
322 |
agaagaggaaattgacca---attactaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaa |
399 |
Q |
| |
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||||||||| |||||||| |||||||||| | |||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
16872456 |
agaagaggagattgaccaattattactaagcttgtgataagggtctaaggtaatagaggatttgaatgcaagaagtgaaaa |
16872376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 70 - 230
Target Start/End: Complemental strand, 16873519 - 16873359
Alignment:
| Q |
70 |
aggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcaccatggaaactattgcga |
169 |
Q |
| |
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|||||||||||||||||||||||||| ||||| || || | |||| ||||| || ||||||||||| ||||| |||||||||||||||||||||| |
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| T |
16873519 |
aggaatttctccaacaaaatcattgtagctcaagtctaatctcttcagtctctgcagatgaagtaactcttgtggaaactcaccatggaaactattgcct |
16873420 |
T |
|
| Q |
170 |
tgtagatcaagaacagcaaggaaagaaagatttcccaattgaggagaaattgtaccttcaa |
230 |
Q |
| |
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||||| ||||||| | |||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
16873419 |
tgtaggtcaagaataacaaggaaagagagatttcccaattgagaggaaattgtaccttcaa |
16873359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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