View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12995_low_9 (Length: 382)
Name: NF12995_low_9
Description: NF12995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12995_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 7290187 - 7289822
Alignment:
| Q |
1 |
caatgtgaatattaataaaaggagaaaaataactgatagctgctagaaaatccattgctttaatattcaaatagagaattttaagttgttgtttgtatta |
100 |
Q |
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| T |
7290187 |
caatgtgaatattaataaaaggagaaaaataactgatagctgctagaaaatccattgctttaatactcaaatagagaattttaagttgttgtttgtatta |
7290088 |
T |
|
| Q |
101 |
aactacaaacatataagattcataatataagaaatataaaagtacacatcagataactaacatggaagcaatcaacatttcattaataaagtataaaata |
200 |
Q |
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| T |
7290087 |
aactaccaccatataggattcataatataagaaatataaaagtacacatcagataactaacatggaagcaatcaacatttcattaataaagtataaaata |
7289988 |
T |
|
| Q |
201 |
tttatgctttttgccataattgtcatgaaataaaatgcaaagttgcccataatacagtggatgccgaaagcacaattttgaactattgtaaggtatcaaa |
300 |
Q |
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| T |
7289987 |
tttatgctttttgccataattgtcatgtaataaaatgcaaagttgcccataatacagtggatgccggaagcacaatttcaaactattttaaggtatcaaa |
7289888 |
T |
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| Q |
301 |
ataggtgcaacatacaaaacaacaaaacattcatgagttaagtacaagtggtttagctatgcaaag |
366 |
Q |
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| T |
7289887 |
ataggtgcaacatacaaaacaacaaaacattcatgagttaagtacaagtggtttagctatgcaaag |
7289822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 34452467 - 34452393
Alignment:
| Q |
1 |
caatgtgaatattaataaaa-ggagaaaaataactgatagctgctagaaaatcc--attgctttaatattcaaat |
72 |
Q |
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||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
34452467 |
caatgtgaatattaaaaaaaaggagagaaataactgatagctgctagaaaatccatattgctttaatactcaaat |
34452393 |
T |
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