View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12996_high_12 (Length: 315)
Name: NF12996_high_12
Description: NF12996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12996_high_12 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 1717455 - 1717754
Alignment:
| Q |
16 |
gacatcatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaggctatctagattgacacctagtggcttat |
115 |
Q |
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| T |
1717455 |
gacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaagctatctagattgacacctagtggctcat |
1717554 |
T |
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| Q |
116 |
tcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagcttcgagtaggtaattcaattgg |
215 |
Q |
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| T |
1717555 |
tcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagtttcgagtaggtaattcatttgg |
1717654 |
T |
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| Q |
216 |
ttaacaaagttttaaataaggagagtgaatcttagagaaagttctagtaagagtgttcctagcattctgtctaaggaggaatgccatgtacactctctaa |
315 |
Q |
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| T |
1717655 |
ttaacaaagttttaaataaggagagtgaatcttagagaaagtgccagtaagagtgttcctagcattctgtctaaggagaaatgctatgtacattctctaa |
1717754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 1738952 - 1739164
Alignment:
| Q |
16 |
gacatcatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaggctatctagattgacacctagtggcttat |
115 |
Q |
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| T |
1738952 |
gacatgatcacataagtatttgggatgtatttcctcacaacatcataagctaacttgtaatagttcttgaggctatcttgattgacaccaagtggctcat |
1739051 |
T |
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| Q |
116 |
tcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagcttcgagtaggtaattcaattgg |
215 |
Q |
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| T |
1739052 |
tcatcagctctattcctcctaaactttttctattattatatctgtaaacaagttcaattcatgtataaagatatcagtttcgagtaggtaattcatttgg |
1739151 |
T |
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| Q |
216 |
ttaacaaagtttt |
228 |
Q |
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| T |
1739152 |
tgaactaagtttt |
1739164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 1754123 - 1754300
Alignment:
| Q |
16 |
gacatcatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaggctatctagattgacacctagtggcttat |
115 |
Q |
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||||| |||||||||| |||||| ||||||||||||| |||||||||| ||| ||||||| ||||| ||||||||||||||||||||| |||||| || |
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| T |
1754123 |
gacattatcacataagcatttggattgtatttcctcactgcatcataagcctccttgtaatatttcttgaggctatctagattgacaccttgtggctcat |
1754222 |
T |
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| Q |
116 |
tcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtat-aaagaaatcag |
192 |
Q |
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| T |
1754223 |
tcatcaactctattcctcctaaacttggtctattaccatacctgtccacaaattcaattcaagtatcaaagaaatcag |
1754300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 1748807 - 1748932
Alignment:
| Q |
16 |
gacatcatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaggctatctagattgacacctagtggcttat |
115 |
Q |
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||||| |||||||||| | |||| ||||||| |||||| ||||||||||| || ||||||| ||||| || ||||| |||||||||||| |||||| || |
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| T |
1748807 |
gacatgatcacataagcctctgggttgtattttctcacagcatcataagctgccttgtaatacttcttgagactatcaagattgacaccttgtggctcat |
1748906 |
T |
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| Q |
116 |
tcatcagctctattcctcctaaactt |
141 |
Q |
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| T |
1748907 |
tcatcagctctattcctcctaaactt |
1748932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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