View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12996_high_14 (Length: 308)

Name: NF12996_high_14
Description: NF12996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12996_high_14
NF12996_high_14
[»] chr5 (15 HSPs)
chr5 (27-152)||(11503978-11504103)
chr5 (27-152)||(11511372-11511497)
chr5 (27-152)||(11518748-11518873)
chr5 (27-152)||(11526153-11526278)
chr5 (27-152)||(11533561-11533686)
chr5 (27-152)||(11496651-11496776)
chr5 (27-152)||(11541008-11541133)
chr5 (27-100)||(11563912-11563985)
chr5 (251-287)||(11504228-11504264)
chr5 (251-287)||(11511622-11511658)
chr5 (251-287)||(11518998-11519034)
chr5 (251-287)||(11526403-11526439)
chr5 (251-287)||(11533813-11533849)
chr5 (252-287)||(11541231-11541266)
chr5 (251-287)||(11496901-11496937)
[»] scaffold1005 (2 HSPs)
scaffold1005 (27-152)||(2151-2276)
scaffold1005 (252-287)||(2374-2409)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 11503978 - 11504103
Alignment:
Q  27 tatagcagttttttgttttgaaaatttggaaccctaagaaaactaatgactctttcaatgatgaaatttttagttttgctgaagaggaaagaaagataag 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503978 tatagcagttttttgttttgaaaatttggaaccctaagaaaactaatgactctttcaatgatgaaatttttagttttgctgaagaggaaagaaagataag 11504077  T
Q  127 agttgatgtttcctgcttttggtaac 152  Q
    ||||||||||||||||||||||||||    
T  11504078 agttgatgtttcctgcttttggtaac 11504103  T

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Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 11511372 - 11511497
Alignment:
Q  27 tatagcagttttttgttttgaaaatttggaaccctaagaaaactaatgactctttcaatgatgaaatttttagttttgctgaagaggaaagaaagataag 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11511372 tatagcagttttttgttttgaaaatttggaaccctaagaaaactaatgactctttcaatgatgaaatttttagttttgctgaagaggaaagaaagataag 11511471  T
Q  127 agttgatgtttcctgcttttggtaac 152  Q
    ||||||||||||||||||||||||||    
T  11511472 agttgatgtttcctgcttttggtaac 11511497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 11518748 - 11518873
Alignment:
Q  27 tatagcagttttttgttttgaaaatttggaaccctaagaaaactaatgactctttcaatgatgaaatttttagttttgctgaagaggaaagaaagataag 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11518748 tatagcagttttttgttttgaaaatttggaaccctaagaaaactaatgactctttcaatgatgaaatttttagttttgctgaagaggaaagaaagataag 11518847  T
Q  127 agttgatgtttcctgcttttggtaac 152  Q
    ||||||||||||||||||||||||||    
T  11518848 agttgatgtttcctgcttttggtaac 11518873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 11526153 - 11526278
Alignment:
Q  27 tatagcagttttttgttttgaaaatttggaaccctaagaaaactaatgactctttcaatgatgaaatttttagttttgctgaagaggaaagaaagataag 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11526153 tatagcagttttttgttttgaaaatttggaaccctaagaaaactaatgactctttcaatgatgaaatttttagttttgctgaagaggaaagaaagataag 11526252  T
Q  127 agttgatgtttcctgcttttggtaac 152  Q
    ||||||||||||||||||||||||||    
T  11526253 agttgatgtttcctgcttttggtaac 11526278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 11533561 - 11533686
Alignment:
Q  27 tatagcagttttttgttttgaaaatttggaaccctaagaaaactaatgactctttcaatgatgaaatttttagttttgctgaagaggaaagaaagataag 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11533561 tatagcagttttttgttttgaaaatttggaaccctaagaaaactaatgactctttcaatgatgaaatttttagttttgctgaagaggaaagaaagatagg 11533660  T
Q  127 agttgatgtttcctgcttttggtaac 152  Q
    ||||||||||||||||||||||||||    
T  11533661 agttgatgtttcctgcttttggtaac 11533686  T

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Target: chr5; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 11496651 - 11496776
Alignment:
Q  27 tatagcagttttttgttttgaaaatttggaaccctaagaaaactaatgactctttcaatgatgaaatttttagttttgctgaagaggaaagaaagataag 126  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11496651 tatagcagttttttgttttgaaaatttggaaccctaagaatactaatgactctttcaatgatgaaatttttagttttgctgaagaggaaagaaagatagg 11496750  T
Q  127 agttgatgtttcctgcttttggtaac 152  Q
    ||||||||||||||||||||||||||    
T  11496751 agttgatgtttcctgcttttggtaac 11496776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 11541008 - 11541133
Alignment:
Q  27 tatagcagttttttgttttgaaaatttggaaccctaagaaaactaatgactctttcaatgatgaaatttttagttttgctgaagaggaaagaaagataag 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11541008 tatagcagttttttgttttgaaaatttggaaccctaagaaaactaatgactctttcaatgatgaaatttttagttttgctgaagaggaaagaaagatagg 11541107  T
Q  127 agttgatgtttcctgcttttggtaac 152  Q
    |||||||||||||||||||| |||||    
T  11541108 agttgatgtttcctgcttttcgtaac 11541133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 11563912 - 11563985
Alignment:
Q  27 tatagcagttttttgttttgaaaatttggaaccctaagaaaactaatgactctttcaatgatgaaatttttagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11563912 tatagcagttttttgttttgaaaatttggaaccctaagaaaactaatgactctttcaatcatgaaatttttagt 11563985  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 11504228 - 11504264
Alignment:
Q  251 aggcgatttgccaacatttgttgtaagaaagctgatg 287  Q
    ||||||||||| |||||||||||||||||||||||||    
T  11504228 aggcgatttgctaacatttgttgtaagaaagctgatg 11504264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 11511622 - 11511658
Alignment:
Q  251 aggcgatttgccaacatttgttgtaagaaagctgatg 287  Q
    ||||||||||| |||||||||||||||||||||||||    
T  11511622 aggcgatttgctaacatttgttgtaagaaagctgatg 11511658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 11518998 - 11519034
Alignment:
Q  251 aggcgatttgccaacatttgttgtaagaaagctgatg 287  Q
    ||||||||||| |||||||||||||||||||||||||    
T  11518998 aggcgatttgctaacatttgttgtaagaaagctgatg 11519034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 11526403 - 11526439
Alignment:
Q  251 aggcgatttgccaacatttgttgtaagaaagctgatg 287  Q
    ||||||||||| |||||||||||||||||||||||||    
T  11526403 aggcgatttgctaacatttgttgtaagaaagctgatg 11526439  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 11533813 - 11533849
Alignment:
Q  251 aggcgatttgccaacatttgttgtaagaaagctgatg 287  Q
    ||||||||||| |||||||||||||||||||||||||    
T  11533813 aggcgatttgctaacatttgttgtaagaaagctgatg 11533849  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 287
Target Start/End: Original strand, 11541231 - 11541266
Alignment:
Q  252 ggcgatttgccaacatttgttgtaagaaagctgatg 287  Q
    |||||||||| |||||||||||||||||||||||||    
T  11541231 ggcgatttgctaacatttgttgtaagaaagctgatg 11541266  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 11496901 - 11496937
Alignment:
Q  251 aggcgatttgccaacatttgttgtaagaaagctgatg 287  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  11496901 aggcgatttgctaacatttgttgtgagaaagctgatg 11496937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1005 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: scaffold1005
Description:

Target: scaffold1005; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 2151 - 2276
Alignment:
Q  27 tatagcagttttttgttttgaaaatttggaaccctaagaaaactaatgactctttcaatgatgaaatttttagttttgctgaagaggaaagaaagataag 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2151 tatagcagttttttgttttgaaaatttggaaccctaagaaaactaatgactctttcaatgatgaaatttttagttttgctgaagaggaaagaaagatagg 2250  T
Q  127 agttgatgtttcctgcttttggtaac 152  Q
    |||||||||||||||||||| |||||    
T  2251 agttgatgtttcctgcttttcgtaac 2276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1005; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 287
Target Start/End: Original strand, 2374 - 2409
Alignment:
Q  252 ggcgatttgccaacatttgttgtaagaaagctgatg 287  Q
    |||||||||| |||||||||||||||||||||||||    
T  2374 ggcgatttgctaacatttgttgtaagaaagctgatg 2409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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