View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12996_high_15 (Length: 304)
Name: NF12996_high_15
Description: NF12996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12996_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 29 - 282
Target Start/End: Original strand, 32062504 - 32062757
Alignment:
| Q |
29 |
caacatgtttgggaagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttt |
128 |
Q |
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| T |
32062504 |
caacatgtttgggaagccaatagactttgttagaaagaaaaggtcactgaagcaagagaatgcaccggagaacaatagtggaaaggaattcggtgggttt |
32062603 |
T |
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| Q |
129 |
tcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggnnnnnnngattaatgaagcaggagaaagcac |
228 |
Q |
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| T |
32062604 |
tcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcac |
32062703 |
T |
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| Q |
229 |
cggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatg |
282 |
Q |
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| T |
32062704 |
cggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatg |
32062757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 32062652 - 32062758
Alignment:
| Q |
42 |
aagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttttcaatccttgccg |
141 |
Q |
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| T |
32062652 |
aagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcgg |
32062751 |
T |
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| Q |
142 |
atgatga |
148 |
Q |
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| T |
32062752 |
atgatga |
32062758 |
T |
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