View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12996_high_16 (Length: 300)

Name: NF12996_high_16
Description: NF12996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12996_high_16
NF12996_high_16
[»] chr6 (5 HSPs)
chr6 (16-300)||(12956555-12956839)
chr6 (16-300)||(12930753-12931037)
chr6 (23-300)||(12947118-12947395)
chr6 (41-300)||(12905664-12905923)
chr6 (41-300)||(12898042-12898302)
[»] chr2 (1 HSPs)
chr2 (16-300)||(17924854-17925138)
[»] chr5 (11 HSPs)
chr5 (43-279)||(10764610-10764843)
chr5 (41-257)||(10563547-10563760)
chr5 (16-254)||(10610233-10610468)
chr5 (89-254)||(10742223-10742388)
chr5 (41-254)||(10748491-10748701)
chr5 (131-298)||(10653765-10653932)
chr5 (98-175)||(10718431-10718508)
chr5 (203-254)||(7191528-7191579)
chr5 (209-255)||(10599610-10599656)
chr5 (204-254)||(10661721-10661771)
chr5 (131-175)||(7191604-7191648)


Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 12956839 - 12956555
Alignment:
Q  16 tattatgagatatcgaaagtgtgtgtagtttactgcaactagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg 115  Q
    |||||| ||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12956839 tattataagatatcgaaagcttgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg 12956740  T
Q  116 caaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagca 215  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  12956739 caaatttagattggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaattcatgttgtctcctaagtctaatatttgtagggcagaagca 12956640  T
Q  216 tttgcaatcgaaatagggattggacctgagaattgatttgctgcaaaagtgaatatttgaagattggggagggtgtggaacatgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  12956639 tttgcaatcgaaatagggattggacctgagaattgatttgctgcaaaatcgaatatttgaagattggggagggtgtggaacatgt 12956555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 12931037 - 12930753
Alignment:
Q  16 tattatgagatatcgaaagtgtgtgtagtttactgcaactagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg 115  Q
    |||||| ||||||||||||   || ||||||||||||| | ||||||||||||| ||| |||||||||||||||||| ||||||||||||||||   ||     
T  12931037 tattataagatatcgaaagcacgtatagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattgttacctaaattgttaacttc 12930938  T
Q  116 caaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagca 215  Q
    |||| ||||   |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12930937 caaacttaggaaggaaagatcttgtaaattcctaagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatatttgtagggcagaagca 12930838  T
Q  216 tttgcaatcgaaatagggattggacctgagaattgatttgctgcaaaagtgaatatttgaagattggggagggtgtggaacatgt 300  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  12930837 tttgcaatcgaagtagggattggacctgagaattgatttgctgcaaaagcgaatatttgaatattggggagggtgtggaacatgt 12930753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 23 - 300
Target Start/End: Complemental strand, 12947395 - 12947118
Alignment:
Q  23 agatatcgaaagtgtgtgtagtttactgcaactagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaattt 122  Q
    ||||||||||||  ||| ||||||||||||| | ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||  ||| |||| ||    
T  12947395 agatatcgaaagcatgtttagtttactgcaatttgtcaaatattttaaaaactctaagtccatagttgaaatgttacctaaattgttaaattccaaactt 12947296  T
Q  123 agattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaa 222  Q
    ||   |||||||||||||||||||   |||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||    
T  12947295 aggaaggaaagatcttgtaaattcctaagacttggaacttgtccaaccaaattcatgttgtgtcctaagtctaatctttgtagggcagaagcatttgcaa 12947196  T
Q  223 tcgaaatagggattggacctgagaattgatttgctgcaaaagtgaatatttgaagattggggagggtgtggaacatgt 300  Q
    | |||||||| |||||||||||||||||||||||| |||||  ||||| || ||||||||||||||||||||||||||    
T  12947195 ttgaaataggaattggacctgagaattgatttgctccaaaatagaatagttcaagattggggagggtgtggaacatgt 12947118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 41 - 300
Target Start/End: Complemental strand, 12905923 - 12905664
Alignment:
Q  41 tagtttactgcaactagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgt 140  Q
    ||||||||||||| | ||||||||||||| ||| ||||||||| |||||||||||||||||||||||||  ||  |||| ||||| ||||||||| ||||    
T  12905923 tagtttactgcaatttgtcaaatattttaaaaactctaaatccttagttgaaatgttacctaaattgttgaatcccaaacttagaatggaaagattttgt 12905824  T
Q  141 aaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggac 240  Q
    |||||| |||||||||||||||||||||||||||||||||| |||  ||||||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  12905823 aaattccctagacttggaacttgtccaaccaaattcatgttttttgataagtctaatatttgtagggcagaagcattatcaatcgaaatagggattggac 12905724  T
Q  241 ctgagaattgatttgctgcaaaagtgaatatttgaagattggggagggtgtggaacatgt 300  Q
    | ||||||||||||| |||||||   |||| || ||||||||||||||||||||||||||    
T  12905723 cagagaattgatttgatgcaaaatgtaataatttaagattggggagggtgtggaacatgt 12905664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 41 - 300
Target Start/End: Complemental strand, 12898302 - 12898042
Alignment:
Q  41 tagtttactgcaactagtcaaatattttagaaattctaaa-tccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttg 139  Q
    ||||||||||||| | ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||  ||  |||| ||||| ||||||||| |||    
T  12898302 tagtttactgcaatttgtcaaatattttaaaaaatctaaaatccatagttgaaatgttacctaaattgttgaatcccaaacttagaatggaaagattttg 12898203  T
Q  140 taaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattgga 239  Q
    ||||||| |||||||||||||||||||||||||||||||||| | |  ||||||||||| |||||||| ||||||||| |||||||||||||| ||||||    
T  12898202 taaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggtagaagcattagcaatcgaaataggaattgga 12898103  T
Q  240 cctgagaattgatttgctgcaaaa-gtgaatatttgaagattggggagggtgtggaacatgt 300  Q
    || |||||||||||| || ||||| || || |||| ||||||||||||||||||||||||||    
T  12898102 ccagagaattgatttcctccaaaatgtaaaaattt-aagattggggagggtgtggaacatgt 12898042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 17924854 - 17925138
Alignment:
Q  16 tattatgagatatcgaaagtgtgtgtagtttactgcaactagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg 115  Q
    |||||| |||||||||||   ||||||||||||||||| | ||||||||||||| ||| |||||||||||||||||| | | |||||||||||||  ||     
T  17924854 tattataagatatcgaaaacttgtgtagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttc 17924953  T
Q  116 caaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagca 215  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | |  ||||||||||| |||||||||||||||     
T  17924954 caaatttagaatggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcg 17925053  T
Q  216 tttgcaatcgaaatagggattggacctgagaattgatttgctgcaaaagtgaatatttgaagattggggagggtgtggaacatgt 300  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||   ||||||| ||||||||||||||||||||| ||||    
T  17925054 tttgcaatcgaaaaagggattggacctgagaattgatttcctgcaaaatcaaatattttaagattggggagggtgtggaagatgt 17925138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 43 - 279
Target Start/End: Original strand, 10764610 - 10764843
Alignment:
Q  43 gtttactgcaactagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgtaa 142  Q
    |||| |||||| | ||||||||||||| ||| ||||||||||| || ||| ||| |||||||||||||  || |||||||||   |  ||||| ||||||    
T  10764610 gtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaa 10764709  T
Q  143 attcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggacct 242  Q
    |||| ||||||||||||||||||||||||| ||   |||  |||||| ||||| || ||||| | ||||||||||||||||||||| |||||||| ||||    
T  10764710 attccctagacttggaacttgtccaaccaattt---gtttgttcctatgtctagtaattgtatgacagaagcatttgcaatcgaaacagggattgtacct 10764806  T
Q  243 gagaattgatttgctgcaaaagtgaatatttgaagat 279  Q
    |||||||||||| || ||||| | ||||||| |||||    
T  10764807 gagaattgatttcctccaaaatttaatattttaagat 10764843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 41 - 257
Target Start/End: Complemental strand, 10563760 - 10563547
Alignment:
Q  41 tagtttactgcaactagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgt 140  Q
    ||||||||| ||| | |||||||| |||| ||| |||||||| ||| ||||| ||||||||||||||||  ||   ||| ||||   | |||||||||||    
T  10563760 tagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagccagtaaagatcttgt 10563661  T
Q  141 aaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggac 240  Q
    || ||| ||||||||||||||||||| |||||||    ||| |   ||||||| | ||||||||||| |||||||||| |||| ||||||||||||||||    
T  10563660 aacttctctagacttggaacttgtcccaccaaata---gttttgagctaagtcgagtacttgtagggaagaagcatttacaatggaaatagggattggac 10563564  T
Q  241 ctgagaattgatttgct 257  Q
    |||||||||||||||||    
T  10563563 ctgagaattgatttgct 10563547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 10610468 - 10610233
Alignment:
Q  16 tattatgagatatcgaaagtgtgtgtagtttactgcaactagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg 115  Q
    |||||| |||||| |||||  | | ||||||||| ||  | ||||||||||||| ||| |||||||| ||||||||| ||||||| |||| |||  |||     
T  10610468 tattattagatatagaaagcttttctagtttactacagtttgtcaaatattttaaaaactctaaatctatagttgaattgttaccgaaatagttgtattc 10610369  T
Q  116 caaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagca 215  Q
    |||| | ||   | |||||||| |||| ||| ||||||||||||||||||||||||||||   ||| |  ||||| || | || |||||||| |||||||    
T  10610368 caaactcagccagtaaagatctggtaacttctctagacttggaacttgtccaaccaaatt---gttttgacctaaatcaattatttgtagggaagaagca 10610272  T
Q  216 tttgcaatcgaaatagggattggacctgagaattgattt 254  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  10610271 tttgcaatggaaacagggattggacctgagaattgattt 10610233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 254
Target Start/End: Original strand, 10742223 - 10742388
Alignment:
Q  89 tgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcct 188  Q
    |||| |||||||||||||||| || ||||||||||   |   |||||| ||||| ||| | ||| ||||||||||||||||||||||  | |  |  |||    
T  10742223 tgaattgttacctaaattgttagactgcaaatttaatctttgaagatcctgtaacttcccaagatttggaacttgtccaaccaaattgttttgatcacct 10742322  T
Q  189 aagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggacctgagaattgattt 254  Q
    || || | |  ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  10742323 aaatcaagtgattgtaaggcagaagcatttgcaatggaaatagggattggacctgtgaattgattt 10742388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 254
Target Start/End: Original strand, 10748491 - 10748701
Alignment:
Q  41 tagtttactgcaactagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgt 140  Q
    ||||||||| ||| | |||||||| |||| ||| |||||||| ||||||||| ||||||| |||| |||   || |||||||||   | |||||||||||    
T  10748491 tagtttactacaatttgtcaaatactttaaaaactctaaatcgatagttgaattgttaccgaaatagttgtcttccaaatttagccagtaaagatcttgt 10748590  T
Q  141 aaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggac 240  Q
    || ||| |||||||||||||||| || |||||||    ||| |   ||||||| | || |||||||| |||||||||| |||| |||||||| |||| ||    
T  10748591 aacttctctagacttggaacttgccccaccaaat---agttttgagctaagtcaagtaattgtagggaagaagcatttacaatggaaataggcattgaac 10748687  T
Q  241 ctgagaattgattt 254  Q
    |  |||| ||||||    
T  10748688 caaagaactgattt 10748701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 298
Target Start/End: Original strand, 10653765 - 10653932
Alignment:
Q  131 aagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcc-taagtctaatacttgtagggcagaagcatttgcaatcgaaat 229  Q
    |||||| ||||||||| | ||||||||||||||||| | |||||| || ||| |    |||||| | | ||| ||||| ||||||||||||||| |||||    
T  10653765 aagatcatgtaaattccccagacttggaacttgtccgagcaaatt-attttgatcagataagtcgagttcttttagggaagaagcatttgcaatggaaat 10653863  T
Q  230 agggattggacctgagaattgatttgctgcaaaagtgaatatttgaagattggggagggtgtggaacat 298  Q
    |||||||| ||||||||||||||| | ||||| |  |||   |||||||||||  ||||||| ||||||    
T  10653864 agggattgtacctgagaattgattggatgcaatatagaaacattgaagattggaaagggtgttgaacat 10653932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 10718431 - 10718508
Alignment:
Q  98 acctaaattgtttgattgcaaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaatt 175  Q
    ||||||||||||||||||||||||||||     ||||| |||||| | | ||| ||||||||||||||||||||||||    
T  10718431 acctaaattgtttgattgcaaatttagaaatcgaagattttgtaactcccctatacttggaacttgtccaaccaaatt 10718508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 7191579 - 7191528
Alignment:
Q  203 tagggcagaagcatttgcaatcgaaatagggattggacctgagaattgattt 254  Q
    ||||| ||||||||||| ||| ||||||||||||| ||||||||||||||||    
T  7191579 tagggaagaagcatttgaaatggaaatagggattgtacctgagaattgattt 7191528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 10599656 - 10599610
Alignment:
Q  209 agaagcatttgcaatcgaaatagggattggacctgagaattgatttg 255  Q
    ||||||||||| ||| ||| ||||||||||||||||||||| |||||    
T  10599656 agaagcatttgaaattgaagtagggattggacctgagaatttatttg 10599610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 10661721 - 10661771
Alignment:
Q  204 agggcagaagcatttgcaatcgaaatagggattggacctgagaattgattt 254  Q
    |||| ||||||||||||||| ||||||||||||| |||||| |||| ||||    
T  10661721 agggaagaagcatttgcaatggaaatagggattgtacctgaaaattcattt 10661771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 7191648 - 7191604
Alignment:
Q  131 aagatcttgtaaattcgctagacttggaacttgtccaaccaaatt 175  Q
    |||||| ||||| ||| ||||||||||||||||||| ||||||||    
T  7191648 aagatcatgtaacttccctagacttggaacttgtccgaccaaatt 7191604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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