View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12996_high_3 (Length: 401)
Name: NF12996_high_3
Description: NF12996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12996_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 22 - 371
Target Start/End: Original strand, 53491588 - 53491937
Alignment:
| Q |
22 |
catcatcatgaaccatcaccatcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaatccttccattcatgtatact |
121 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53491588 |
catcaccatgaaccatcaccatcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaatccttccattcatgtatact |
53491687 |
T |
|
| Q |
122 |
ctagacattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaactt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53491688 |
ctagacattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaactt |
53491787 |
T |
|
| Q |
222 |
ttcagcaaacttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaacaggaggaaaggcc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53491788 |
ttcagcaaacttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaacaggaggaaaggcc |
53491887 |
T |
|
| Q |
322 |
tcaaatactcattacagatgccaaagatgcatatattaaggcagattcct |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53491888 |
tcaaatactcattacagatgccaaagatgcatatattaaggcagattcct |
53491937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 28 - 309
Target Start/End: Original strand, 53499187 - 53499468
Alignment:
| Q |
28 |
catgaaccatcaccatcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaatccttccattcatgtatactctagac |
127 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| | |||||||||||||||||||||||| |
|
|
| T |
53499187 |
catgaaccatcaccattgctccaatctgttaaataagcggactaaaatataaatgcaatcgtacataaaaggagttcttccattcatgtatactctagac |
53499286 |
T |
|
| Q |
128 |
attaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
53499287 |
attaaaagcttacagttcgagtagaatagccccatgagttctgccaaaccattgctttctctcccttcttatcttcaaattttacctcgaacttttcagc |
53499386 |
T |
|
| Q |
228 |
aaacttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaaca |
309 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53499387 |
aaacttttgtcccaagcaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaactgaaca |
53499468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 123 - 309
Target Start/End: Original strand, 16070390 - 16070576
Alignment:
| Q |
123 |
tagacattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttt |
222 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | |||||||| |||||||||||||||| ||||||| ||||| |||||||||| |||| ||| ||||| |
|
|
| T |
16070390 |
tagacattgaaagcttacagttcgagtagaaaacccccatgagttctgccaaaccattgttttctctaccttcttatcttcaaagtttatctcaaacttc |
16070489 |
T |
|
| Q |
223 |
tcagcaaacttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaaca |
309 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||||| ||||||||||| |
|
|
| T |
16070490 |
tcagcaaacttttgtcccaaacaatgggtagctgcaccttgtatcccacgaccaatgtttggaataaaagcctagaaaaattgaaca |
16070576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 53499888 - 53499936
Alignment:
| Q |
323 |
caaatactcattacagatgccaaagatgcatatattaaggcagattcct |
371 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
53499888 |
caaagactcattacagatgccaaaaatgcatatagtaaggcagattcct |
53499936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 16070267 - 16070303
Alignment:
| Q |
22 |
catcatcatgaaccatcaccatcgctccaatctgtta |
58 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
16070267 |
catcaccatgaaccatcaccatcactccaatctgtta |
16070303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 132 - 300
Target Start/End: Complemental strand, 45355076 - 45354908
Alignment:
| Q |
132 |
aaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaac |
231 |
Q |
| |
|
||||||||||||||||||| |||| |||| || |||||||| ||||||||||||||||||||| || |||| | |||| ||| ||| ||| |||||| |
|
|
| T |
45355076 |
aaagcttacagttcgagtactataggcccacgagttctgccagaccattgctttctctcccttctcattttcatagtttatctcaaacattttagcaaaa |
45354977 |
T |
|
| Q |
232 |
ttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaa |
300 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
45354976 |
ttttgtcccaaacaatgagaagttgcaccttgtataccacgaccagtgtttggaataaatgcctaggaa |
45354908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 45355184 - 45355140
Alignment:
| Q |
22 |
catcatcatgaaccatcaccatcgctccaatctgttaaaaaagcg |
66 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
45355184 |
catcaccatgaaccatcaccatcaccccaatctgttgaaaaagcg |
45355140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University