View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12996_high_4 (Length: 392)
Name: NF12996_high_4
Description: NF12996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12996_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 30 - 384
Target Start/End: Complemental strand, 3215311 - 3214958
Alignment:
| Q |
30 |
cttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacct |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
3215311 |
cttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcaaatgcttgcaaaggcaagacaac-ttcgtgttgaattgcgtgctacct |
3215213 |
T |
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| Q |
130 |
cgtttgataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcactt |
229 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215212 |
cgtttgataatcgtacggtgcaagagtatctcattcatactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcactt |
3215113 |
T |
|
| Q |
230 |
agatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctg |
329 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215112 |
agatgttattttggaaggtttaccacatggttatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctg |
3215013 |
T |
|
| Q |
330 |
ctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatgatg |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215012 |
ctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatgatg |
3214958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 30 - 385
Target Start/End: Complemental strand, 32460826 - 32460471
Alignment:
| Q |
30 |
cttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacct |
129 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||||||||| || | ||||||||| |||| |||| | |
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| T |
32460826 |
cttcgcatgcgtatgaacttcggaacaaacttgtgacctattttcacaagcagatgcgtgcaaaggcaaggcagt-tacgtgttgaactgcgttctactt |
32460728 |
T |
|
| Q |
130 |
cgtttgataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgctt-caattgatgatccaattcctgtcaatcagcact |
228 |
Q |
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| ||||||||||||||||||| ||| |||| |||| | ||||||| | || || |||||||||| | |||| ||||||| |||| | | |||||| | |
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| T |
32460727 |
ctcttgataatcgtacggtacaggagcatcttcttcgcattcgcaatttaattgataatcttgctttccattggtgatccagttcccattactcagcatt |
32460628 |
T |
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| Q |
229 |
tagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctct |
328 |
Q |
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||||||| ||||| |||||||||||||| | ||||||||||| || || |||||||| || || ||||| |||||| || |||||||| || ||||| |
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| T |
32460627 |
tagatgtaattttagaaggtttaccacaagagtatagtccagtgatttcagttgttgaaagcaaatttgacactattgatattgatgaggtagagtctct |
32460528 |
T |
|
| Q |
329 |
gctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatgatgt |
385 |
Q |
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| ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| |
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| T |
32460527 |
gttaattgctcatgagactcgtcttgacaagttcaagaagaagactattgatgatgt |
32460471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 367
Target Start/End: Complemental strand, 36399779 - 36399448
Alignment:
| Q |
35 |
catgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacctcgttt |
134 |
Q |
| |
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||||||||| |||| | | | ||||||||| | |||||||| || ||||||| ||| ||||| | |||| || |||||||| |||| |||| || || |
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| T |
36399779 |
catgcgtatgaactttgggataaacttgtggcatattttcacaaacagatgcgtgcgaaggcgcgtcaac-ttagtgttgaactgcgttctacttctctt |
36399681 |
T |
|
| Q |
135 |
gataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcacttagatg |
234 |
Q |
| |
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| |||| ||||||||| || ||||| |||||| ||| ||||| | || ||||| || || || | |||||| ||||||| ||||| || || |||| |
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| T |
36399680 |
gcaaatcttacggtacaggattatcttcttcgtattcgtgatcttgttgataatctagcctctataggagatccagttcctgttaatcaacatttggatg |
36399581 |
T |
|
| Q |
235 |
ttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctgctaat |
334 |
Q |
| |
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| ||||| ||||||||||| || | | |||||| ||||| ||||| || || || || ||||||||||||||| | || || ||||| ||||| || | |
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| T |
36399580 |
tgattttagaaggtttaccgcaagattttagtcctgttatatctgtagtggaaagcaaatttgatgttattgacgttgacgaagttgagtctcttcttct |
36399481 |
T |
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| Q |
335 |
tgctcatgaaactcgtcttgacaagttcaagaa |
367 |
Q |
| |
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|||||||||||| |||||||| || |||||||| |
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| T |
36399480 |
tgctcatgaaacacgtcttgataaattcaagaa |
36399448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 367
Target Start/End: Complemental strand, 52665923 - 52665850
Alignment:
| Q |
294 |
tttgatgttattgacatagatgaggttgaatctctgctaattgctcatgaaactcgtcttgacaagttcaagaa |
367 |
Q |
| |
|
||||||||||||||||| || || ||||| ||||| || ||||||||||||| |||||||| || |||||||| |
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| T |
52665923 |
tttgatgttattgacattgacgaagttgagtctcttcttcttgctcatgaaacacgtcttgataaattcaagaa |
52665850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 367
Target Start/End: Complemental strand, 24789452 - 24789296
Alignment:
| Q |
211 |
ttcctgtcaatcagcacttagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacat |
310 |
Q |
| |
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||||||| ||||| || || ||||| ||||| |||||||||||||| | | |||||| |||| | ||| || || || || ||||||||||||||| | |
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| T |
24789452 |
ttcctgttaatcaacatttggatgtgattttagaaggtttaccacaagattttagtcctattatatttgtagtggaaagcaaatttgatgttattgacgt |
24789353 |
T |
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| Q |
311 |
agatgaggttgaatctctgctaattgctcatgaaactcgtcttgacaagttcaagaa |
367 |
Q |
| |
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|| || ||||| ||||| || || |||||||||| |||||||| || |||||||| |
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| T |
24789352 |
tgacgaagttgagtctcttcttcttactcatgaaacacgtcttgataaattcaagaa |
24789296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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