View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12996_high_5 (Length: 376)
Name: NF12996_high_5
Description: NF12996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12996_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 42083351 - 42083066
Alignment:
| Q |
17 |
aggccaaatcataagtgttagtgagaaaccagataaactctacgtaagtcacaaaaccttatcgtccatgttcatttattaaattttaagatattaatta |
116 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42083351 |
aggccaaatcataagtgttggtgagaaaccagataaactctacgtaagtcacaaaaccttatcgtccatgttcatttattaaattttaagatattaatta |
42083252 |
T |
|
| Q |
117 |
tttgaaagctatgtagcaccgatgcttcatattcaagaaagacgtatctggtgtccgacacttgtagttacattcaatttcttccatttttcaaattatt |
216 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42083251 |
tttgaaagctatgcagcaccgatgcttcatattaaagaaagacgtatctggtgtccgacacttgtagttacattcaatttcttccatttttcaaattatt |
42083152 |
T |
|
| Q |
217 |
atcgttgtcaatgtctcagttgtgtttgttgtatcatctagaactgaatattgttttcttccttttggtggttgtgaaaacaggtg |
302 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42083151 |
atcgatgtcaatgtctcagttgtgtttgttgtatcatctagaactgaatattgttttcttccttttggtggttgtgaaaacaggtg |
42083066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 42086868 - 42086665
Alignment:
| Q |
17 |
aggccaaatcataagtgttagtgagaaaccagataaactctacgtaagtcacaaaaccttatcgtccatgttcatttattaaattttaagatattaatta |
116 |
Q |
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||||||||||| ||| || |||| ||||||| | |||| | ||||||||||||||| | || ||||||| ||| |||||||||| ||| ||| | |
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| T |
42086868 |
aggccaaatcaatagttttggtgacaaaccaggtggactcaaggtaagtcacaaaaccctttc-tccatgtgcatatattaaatttgaaggtatga---- |
42086774 |
T |
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| Q |
117 |
tttgaaagctatgtagcaccgatgcttcatattcaagaaagacgtatctggtgtccgacacttgtagttacattcaatttcttccatttttcaaattatt |
216 |
Q |
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| T |
42086773 |
tttgaaagctatgtagcac-gacacttcatatt----aatgacgtatctggtgtccaatacttgtagttacattcaatttcatccatttttaaaattgtt |
42086679 |
T |
|
| Q |
217 |
atcgttgtcaatgt |
230 |
Q |
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|| | ||||||||| |
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| T |
42086678 |
attgatgtcaatgt |
42086665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 42083067 - 42083014
Alignment:
| Q |
323 |
tgctgagatgtttatgtatgtcggtacacttagggtgctgacagagggccgtgc |
376 |
Q |
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| T |
42083067 |
tgctgagatgtttctgtatgtcggtacacttagggtgctgacagagggccgtgc |
42083014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 255 - 352
Target Start/End: Complemental strand, 42086611 - 42086520
Alignment:
| Q |
255 |
tagaactgaatattgttttcttccttttggtggttgtgaaaacaggtggttgagtcattagtacccattgctgagatgtttatgtatgtcggtacact |
352 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||| |
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| T |
42086611 |
tagaactgaacattgttttcttccttttggtg------aaaacaggtggttgattcattagtacctcttgctgagatgtttcagtatgtcagtacact |
42086520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 22284482 - 22284533
Alignment:
| Q |
168 |
tgtccgacacttgtagttacattcaatttcttccatttttcaaattattatc |
219 |
Q |
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|||||||||| || |||||||||||| || |||||||||||||||||||||| |
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| T |
22284482 |
tgtccgacacatgcagttacattcaaatttttccatttttcaaattattatc |
22284533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 37603961 - 37603915
Alignment:
| Q |
179 |
tgtagttacattcaatttcttccatttttcaaattattatcgttgtc |
225 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||||| |||| |
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| T |
37603961 |
tgtatttacattcaatttcttccatttttcaaattgttatcggtgtc |
37603915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 3262086 - 3262022
Alignment:
| Q |
172 |
cgacacttgtagttacattcaatttcttccatttttcaaattattatcgttgtcaatgtctcagt |
236 |
Q |
| |
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|||||| ||||||||| |||||||||||| ||||| |||||||||| ||||||||| ||||| |
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| T |
3262086 |
cgacacatgtagttactttcaatttcttctattttgaaaattattataaatgtcaatgtgtcagt |
3262022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 6933194 - 6933139
Alignment:
| Q |
181 |
tagttacattcaatttcttccatttttcaaattattatcgttgtcaatgtctcagt |
236 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||| |||| |||| ||||| |
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| T |
6933194 |
tagttactttcaatttcttccatttttcaaaatactatcggtgtcgatgtgtcagt |
6933139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 18626976 - 18626931
Alignment:
| Q |
174 |
acacttgtagttacattcaatttcttccatttttcaaattattatc |
219 |
Q |
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|||| |||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
18626976 |
acacatgtagttatattcagtttcttccagttttcaaattattatc |
18626931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 30922574 - 30922528
Alignment:
| Q |
179 |
tgtagttacattcaatttcttccatttttcaaattattatcgttgtc |
225 |
Q |
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|||||||||||||||||| || |||||||| |||||||||| ||||| |
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| T |
30922574 |
tgtagttacattcaatttattgcatttttctaattattatcattgtc |
30922528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 8217034 - 8217086
Alignment:
| Q |
179 |
tgtagttacattcaatttcttccatttt-tcaaattattatcgttgtcaatgt |
230 |
Q |
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||||||||||||||||| |||| ||||| | ||||||||||||||||| |||| |
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| T |
8217034 |
tgtagttacattcaattccttctattttctaaaattattatcgttgtctatgt |
8217086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 19629069 - 19629033
Alignment:
| Q |
183 |
gttacattcaatttcttccatttttcaaattattatc |
219 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||||| |
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| T |
19629069 |
gttacattcaattacttccatttttcaaagtattatc |
19629033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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