View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12996_high_6 (Length: 353)
Name: NF12996_high_6
Description: NF12996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12996_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 293
Target Start/End: Complemental strand, 31541835 - 31541573
Alignment:
| Q |
22 |
ctcttagatttttcatgaaaaatttgatgggaaaagtaatcaaattaagtgatctttgatcgcattatattgttgctctctctttacagcctataatagt |
121 |
Q |
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| T |
31541835 |
ctcttagatttttcatgaaaaatttgatgggaaaagcaatcaaattaagtgatctttgatcgcattatattgttgttctctctttacagcctataatagt |
31541736 |
T |
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| Q |
122 |
tgatggtatactctgttaagtgttaacaatagtgctaatgggaacagtagcttgaaaa-gggttcaacctcgttaataattaatttaagatcatcnnnnn |
220 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31541735 |
tgatggtatactctgttaagtgttaacaataatgctaatgggaacagtggcttgaaaaggggttcaacctcgttaataattaatttaagatcatc----- |
31541641 |
T |
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| Q |
221 |
nnnnnnnnnnnnatatatatattggtccatgatccacctctattcatattacaattacaatttacattccttc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31541640 |
-----tttttttatatatatattggtccatgatccacctctattcatattacaattgcaatttacattccttc |
31541573 |
T |
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