View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12996_high_9 (Length: 338)
Name: NF12996_high_9
Description: NF12996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12996_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 2 - 318
Target Start/End: Complemental strand, 41250110 - 41249804
Alignment:
| Q |
2 |
agttagttctgaagagaagaaattaaagacattggaaagacatgatcaaatgttttgtattatttgagatgaattttatgagactggtatttatttattc |
101 |
Q |
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| T |
41250110 |
agttagttctgaagagaagaaattaaagacat-ggaaagacatgatcaaatgttttg---------agatgaattttatgagactggtatttatttattc |
41250021 |
T |
|
| Q |
102 |
tgccactggtagttatcagcacagatttggtactttattttcagctggctggatgtgatattgtgatgattgatgtcccacaaaaattatgagtacattt |
201 |
Q |
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| T |
41250020 |
tgccactggtagttatcagcacagatttggtactttattttcagctggctggatgtgatattgtgatgattgatgtcccacaaaaattatgagtatattt |
41249921 |
T |
|
| Q |
202 |
tcaaattttgatgagtttaaagatgaatcgatacaggggtgatttgtaatgtagtgatcctatgatgttttgcatagcatgaaatatacattattcaact |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41249920 |
tcaaattttgatgagtttaaagatgaatcgatacaggggggatttgtaatgtagtgatcctctgatgttttgcatagcatgaaatatacattattcaact |
41249821 |
T |
|
| Q |
302 |
ggttttttatatgcaca |
318 |
Q |
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|||||| |||||||||| |
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| T |
41249820 |
ggttttatatatgcaca |
41249804 |
T |
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