View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12997_high_2 (Length: 382)
Name: NF12997_high_2
Description: NF12997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12997_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 14327901 - 14327563
Alignment:
| Q |
10 |
attattcttgaaagtaatttccatttctatatctnnnnnnncactacaatcatttttacacgctcatcaaaattccctatatatttaaaagtcctcaaac |
109 |
Q |
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| T |
14327901 |
attattcttgaaagtaatttccatttctatatctaaaaaaacactacaatcatttttacacgctcatcaaaattccctatatatttaaaagtcctcaaac |
14327802 |
T |
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| Q |
110 |
tctttcaacctactttccttctgtcccctcacttttctacaaacttctcaaacaagctcttttccacttaacctaaaccaaacttcttttttccttaaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14327801 |
tctttcaacctactttccttctgtcccctcacttttctacaaacttctcaaacaagctcttttccacttaacctaaaccaaacttcttttttccttaaat |
14327702 |
T |
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| Q |
210 |
tctttctaagtgcnnnnnnnncttttccaattcctctctttattctttcttctcctcggtacttttcactttcccactagtttcattttattcctcaaga |
309 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14327701 |
tctttctaagtgc--aaaaaacttttccaattcctctctttattctttcttctcctcagtacttttcactttcccactagtttcattttattcctcaaga |
14327604 |
T |
|
| Q |
310 |
aaaaagcaaaaccataatctttattccctcatacacaacac |
350 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14327603 |
aaaaagcaaaaccataatctttattccctcatacataacac |
14327563 |
T |
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