View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12997_high_3 (Length: 355)
Name: NF12997_high_3
Description: NF12997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12997_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 33600068 - 33600405
Alignment:
| Q |
1 |
caccacatagaagcagtgccacaggtaaattcatttttcattgaaatgaacagataagcatgtgtttgacaaaatggccatcaattattaaattcaaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33600068 |
caccacatagaagcagtgccacaggaaaattcatttttcattgaaatgaacagataagcatgtgtttgacaaaatggccatcaattattaaattcaaaag |
33600167 |
T |
|
| Q |
101 |
tcaagcaaaatcaagtagttatcaacctatcaataagtcaagcaggctggttctcgttagagatcttaaacaatccaagaccaaaattaagttttaaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33600168 |
tcaagcaaaatcaagtagttatcaacctatcaataagtcaagcaggctagttctcgttagagatcataaacaatccaagaccaaaattaagttttaaaac |
33600267 |
T |
|
| Q |
201 |
aaacnnnnnnnnngtcaaatataggcataggttttattcattcataatttaaaaggaattatatatacaatatcttacttctcgacaattcaagtacaca |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33600268 |
aaac-aaaaaaaagtcaaatataggcataggttttattcattcataatttaaaaggaattatatatacaatatcttacttctcgacaattcgagtacaca |
33600366 |
T |
|
| Q |
301 |
tgcgctctaaatcctccacgtacagatgatagtacttcg |
339 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33600367 |
tgcgctctaaatcctccaagtacagatgatagtacttcg |
33600405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 45579648 - 45579606
Alignment:
| Q |
21 |
acaggtaaattcatttttcattgaaatgaacagataagcatgt |
63 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
45579648 |
acaggaaaattcatttttcattcaaatgaacagataagtatgt |
45579606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University