View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12997_low_1 (Length: 454)
Name: NF12997_low_1
Description: NF12997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12997_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 10 - 435
Target Start/End: Complemental strand, 7133189 - 7132764
Alignment:
| Q |
10 |
tattctgattaagtggcaggacgcgaatgcggctatttatattcatggttgttagctagaggatcgtttgaattggcttctggaggaagttaagctcgac |
109 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
7133189 |
tattctgattgagtggcaggacgcgaatgcggctatttatattcatggttgttagctagaggatcatttgaattggcttctggaggaagttaagctcggc |
7133090 |
T |
|
| Q |
110 |
atcaggtccattctactgccgtattcagagtttgttagtgatcaatataagtggccggcaaaaacaaatatgttaatagccttagactgaggcttcacag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7133089 |
atcaggtccattctactgccgtattcagagtttgttagtgatcaatataagtggccggaaaaaacaaatatgttaatagccttagactgaggctccacag |
7132990 |
T |
|
| Q |
210 |
tgtttatatctaccttgttacttacataccatttcttcagcttcttcaagctcaattcgactaaatgtggctttagatttgcccaaattaattaaaagtc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7132989 |
tgtttatatctaccttgttacttacataccatttcttcagcttcttcaagctcaattcgactaaatgtggctttagatttgcccaaattaactaaaagtc |
7132890 |
T |
|
| Q |
310 |
cgatagtcattcatgagcgaagaaaatgctaataatggtggcagtcacatttggctctgaagacaatatattgttccaaaatattcaacacctatcctta |
409 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7132889 |
caatagtcattcatgagcgaagaaaatgctaataatggtggcagtcacatttggctctgaagacaatatattgttccaaaatattcaacacctatcctta |
7132790 |
T |
|
| Q |
410 |
agcttttaattaaataccatgagtac |
435 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
7132789 |
agcttttaattaaataccatgagtac |
7132764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 328 - 395
Target Start/End: Complemental strand, 7136813 - 7136746
Alignment:
| Q |
328 |
gaagaaaatgctaataatggtggcagtcacatttggctctgaagacaatatattgttccaaaatattc |
395 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7136813 |
gaagaaaatgccaataatggtggcagtcacatttggctctgaagacaatatgttgttccaaaatattc |
7136746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 168 - 298
Target Start/End: Complemental strand, 7137588 - 7137462
Alignment:
| Q |
168 |
caaaaacaaatatgttaatagccttagactgaggcttcacagtgtttatatctaccttgttacttacataccatttcttcagcttcttcaagctcaattc |
267 |
Q |
| |
|
|||| ||||||| ||||||| || ||| |||| || ||| || ||||||||||||||||| | ||| |||||||||||||||||||||||||||| |
|
|
| T |
7137588 |
caaagacaaatacgttaataaccagagattgagactccacggtatttatatctaccttgtttc----atatcatttcttcagcttcttcaagctcaattt |
7137493 |
T |
|
| Q |
268 |
gactaaatgtggctttagatttgcccaaatt |
298 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |
|
|
| T |
7137492 |
gactaaacgtggctttagatttgcccaaatt |
7137462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 7124686 - 7124594
Alignment:
| Q |
48 |
atattcatggttgttagctagaggatcgtttgaattggcttctggaggaagttaagctcgacatcaggtccattctactgccgtattcagagtt |
141 |
Q |
| |
|
||||| ||||||||| |||| |||||||||||||||||| || ||||||||| |||||| | |||||||||||| |||||||| || ||||||| |
|
|
| T |
7124686 |
atattgatggttgttggctaaaggatcgtttgaattggc-tccggaggaagtgaagctccatatcaggtccattgtactgccgcatacagagtt |
7124594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 7127885 - 7127827
Alignment:
| Q |
48 |
atattcatggttgttagctagaggatcgtttgaattggcttctggaggaagttaagctc |
106 |
Q |
| |
|
||||| || |||||| ||||||||||||||||||||| || | ||| |||||||||||| |
|
|
| T |
7127885 |
atattgattgttgttggctagaggatcgtttgaattgcctcccggaagaagttaagctc |
7127827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University