View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12997_low_4 (Length: 341)
Name: NF12997_low_4
Description: NF12997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12997_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 2587023 - 2587147
Alignment:
| Q |
1 |
acgccgctcatatatagacaccgatactaatttaaaaattgaaagtaattgaatgtaacacatgtttcagtgtcggacaccaacacatgttaaacacacg |
100 |
Q |
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| T |
2587023 |
acgccgctcatatatagacaccgatactaatttaaaaattgaaagtaattgaatgtaacacatgtttcagtgtcggacaccaacacatgttaaacacacg |
2587122 |
T |
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| Q |
101 |
acactgtcgatgttgcattggttac |
125 |
Q |
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| T |
2587123 |
acactgtcgatgttgcattggttac |
2587147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 219 - 341
Target Start/End: Original strand, 2587241 - 2587365
Alignment:
| Q |
219 |
tccatacaactct--atggataaaaatgggagaagctagcaatagtgacacattagctaaattatcaagatagaatcataatcactatttatgacatcat |
316 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2587241 |
tccatacaactctttatggataaaaatgggagaagctagcaatagtgacacattagctaaattatcaagatagaatcataatcactatttatgacatcat |
2587340 |
T |
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| Q |
317 |
atttaaataacccttcactaatttc |
341 |
Q |
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| T |
2587341 |
atttaaataacccttcactaatttc |
2587365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 10265962 - 10266006
Alignment:
| Q |
15 |
tagacaccgatactaatttaaaaattgaaagtaattgaatgtaac |
59 |
Q |
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| T |
10265962 |
tagacaccgatagtaatttaaaaaatgaaagtgattgaatgtaac |
10266006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 7276746 - 7276814
Alignment:
| Q |
16 |
agacaccgatactaatttaaaa-attgaaagtaattgaatgtaaca-catgtttcagtgtcggacacca |
82 |
Q |
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|||||| |||| ||| |||||| | ||||||||||| ||||||||| ||||| |||||||||||||||| |
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| T |
7276746 |
agacactgataataacttaaaagaatgaaagtaattaaatgtaacaacatgtgtcagtgtcggacacca |
7276814 |
T |
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