View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12997_low_5 (Length: 238)
Name: NF12997_low_5
Description: NF12997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12997_low_5 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 6262584 - 6262806
Alignment:
| Q |
17 |
aatttatgttgcaagaaatttttattttcaaatgtaacaatgttacatcttttataagtgaggagattcaagtttcaagttattcatttcaaaattggta |
116 |
Q |
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| T |
6262584 |
aatttatgttgcaagaaatttttattttcaaatgtaacaatgttacatcttttataagtgaggagattcaagtttcaagttattcatttcaaaattggta |
6262683 |
T |
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| Q |
117 |
tccaaagtctatacacatataagtgtataactattattcattagtaatgcattacaagttatgtcttgaattaactaaaccactc----atagttctcta |
212 |
Q |
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| T |
6262684 |
tccaaagtctatacacatataagtgtataactattattcattagtaatgcattaca---tatgtcttgaattaactaaaccactcatatatagttctcta |
6262780 |
T |
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| Q |
213 |
tacatatatgatgattcctaattaac |
238 |
Q |
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| T |
6262781 |
tacatatatgatgattcctaattaac |
6262806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 6270956 - 6271044
Alignment:
| Q |
66 |
ttttataagtgaggagattcaagtttcaagttattcatttcaaaattggtatccaaagtctatacacatataagtgtataactattatt |
154 |
Q |
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| T |
6270956 |
ttttattagtgagtagattcaagtttcaaattattcatttccgaattagtatccaaaatctatacacatatcagtgtataactattatt |
6271044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 149
Target Start/End: Original strand, 6278840 - 6278950
Alignment:
| Q |
37 |
tttattttcaaatgtaacaatgttacatcttttataagtgaggagattcaagtttcaagtta-ttcatttcaaaattggtatccaaagtctatacacata |
135 |
Q |
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| T |
6278840 |
tttattttcaaatgtaataatgttacat-ttttatcggtgagtagattcaagtttcaaattatttaatttccgaattggtttccaaaatctatacac--a |
6278936 |
T |
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| Q |
136 |
taagtgtataacta |
149 |
Q |
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| T |
6278937 |
aaagtgtataacta |
6278950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 6283741 - 6283809
Alignment:
| Q |
25 |
ttgcaagaaatttttattttcaaatgtaacaatgttacatcttttataagtgaggagattcaagtttcaa |
94 |
Q |
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| T |
6283741 |
ttgcaagaacattttattttcaaatgtaataatgttacat-ttttattagctagaagattcaagtttcaa |
6283809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 6232854 - 6232921
Alignment:
| Q |
25 |
ttgcaagaaatttttattttcaaatgtaacaatgttacatcttttataagtgaggagattcaagtttca |
93 |
Q |
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| T |
6232854 |
ttgcaagaacgttttatttttaaatgttataatgttacat-ttttattggtgagtagattcaagtttca |
6232921 |
T |
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