View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12998_high_11 (Length: 311)
Name: NF12998_high_11
Description: NF12998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12998_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 1273971 - 1274277
Alignment:
| Q |
1 |
tttgcatctcaataaactcaatataaaataatctttatattattgaccttattgattgcattgattacattcacctgtatagtacctttttcctgttttg |
100 |
Q |
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| T |
1273971 |
tttgcatctcaataaactctatataaaataatctttatattattgaccttattgattgcattgattacattcacctgtatagtacctttttcctgttttg |
1274070 |
T |
|
| Q |
101 |
gtctctttctctcactttgatgaattcatagaaattattatgatgaagtgaaaatagtactaaccatcttaatagtatagtactagtatctgttatttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1274071 |
gtctctttctctcactttgatgaattcatagaaattattatgatgaagtgaaaatagtactaaccatcttaatagtatagtactagtatctgttatttct |
1274170 |
T |
|
| Q |
201 |
aatctatcaatgttttttatgtctctttcattcattttattcacttgcttacacaaacggcaaccttaactactatacttactcacaccagcttattctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1274171 |
aatctatcaatgttttttatgtctctttcattcattttattcacttgcttacacaaacggcaaccttaactactatacttactcacaccaacttattctt |
1274270 |
T |
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| Q |
301 |
ctctctc |
307 |
Q |
| |
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||||||| |
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| T |
1274271 |
ctctctc |
1274277 |
T |
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