View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12998_high_3 (Length: 526)
Name: NF12998_high_3
Description: NF12998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12998_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 12 - 511
Target Start/End: Complemental strand, 23244844 - 23244346
Alignment:
| Q |
12 |
tcatcaacatcaatatcaccaacatcatttaaaatcatcccagttttgtggtccacaaccttaaaatcaaaacactgaataattgcaccaagcaatgctg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23244844 |
tcatcaacatcaatatcaccaacatcatttaaaatcatcccagttttgtggtccacaaccttaaaatcaaaacactgaataattgcaccaagcaatgctg |
23244745 |
T |
|
| Q |
112 |
gcacttcttgcatggctaacgaaacaccaggacacattcttcttccagacccaaatggtagaagttgaaaatgttgtcccctaacatcaattgaatctcc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23244744 |
gcacttcttgcatggctaacgaaacaccaggacacattcttcttccagatccaaatggtagaagttgaaaatgttgtcccctaacatcaattgaatctcc |
23244645 |
T |
|
| Q |
212 |
ttcaccatttttcaagaatctttcaggacgaaactctaatgggtttttccataattttggatttctcccaatggaccaaacattgacaaagagtaatgtg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23244644 |
ttcaccatttttcaagaatctttcaggacgaaactctaatgggtttttccataattttggatttct-ccaatggaccaaacattgacaaagagtaatgtg |
23244546 |
T |
|
| Q |
312 |
ttttctgggatcacatagttttcaactttgcattctgctacacatcttcttgtaaccataggaactggtgggtgaagacgaaatgtttctcttatgattg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23244545 |
ttttctgggatcacatagttttcaactttgcattctgctacacatcttcttgtaaccataggaactggtgggtgaagacgaaatgtttctcttatgattg |
23244446 |
T |
|
| Q |
412 |
cttgtagatatggcatatttgaaatgtcggattcttcaactgttctgtttttgcctactatgttgtcgatttcttcacgagctttttggagtaaagatgg |
511 |
Q |
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| T |
23244445 |
cttgtagatatggcatatttgaaatgtcggattcttcaactgttctgtttttgcctactatgttgtcgatttcttcacgagctttttggagtaaagatgg |
23244346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 34754548 - 34754627
Alignment:
| Q |
138 |
ccaggacacattcttcttccagacccaaatggtagaagttgaaaatgttgtcccctaacatcaattgaatctccttcacc |
217 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||||||| ||||| || ||||||| |||||||||| || ||||||| |
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| T |
34754548 |
ccaggacacattctccttccggacccaaatggtagaagttggaaatgctgacccctaagatcaattgaagctgcttcacc |
34754627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 34762527 - 34762606
Alignment:
| Q |
138 |
ccaggacacattcttcttccagacccaaatggtagaagttgaaaatgttgtcccctaacatcaattgaatctccttcacc |
217 |
Q |
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| T |
34762527 |
ccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgaagctgcttcacc |
34762606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 34781661 - 34781582
Alignment:
| Q |
138 |
ccaggacacattcttcttccagacccaaatggtagaagttgaaaatgttgtcccctaacatcaattgaatctccttcacc |
217 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| || ||||||| |
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| T |
34781661 |
ccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgaagctgcttcacc |
34781582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 312 - 499
Target Start/End: Original strand, 9398850 - 9399037
Alignment:
| Q |
312 |
ttttctgggatcacatagttttcaactttgcattctgctacacatcttcttgtaaccataggaactggtgggtgaagacgaaatgtttctcttatgattg |
411 |
Q |
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||||||||||||||||| ||||||| |||||||| | ||||||||||| || ||||||||||| |||||||| ||||||||||||||| |||| || | |
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| T |
9398850 |
ttttctgggatcacataattttcaattttgcattgcgtgacacatcttctagtgaccataggaaccggtgggtgtagacgaaatgtttcttttattatgg |
9398949 |
T |
|
| Q |
412 |
cttgtagatatggcatatttgaaatgtcggattcttcaactgttctgtttttgcctactatgttgtcgatttcttcacgagctttttg |
499 |
Q |
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|||| | ||| || | ||||| ||| ||||| || ||| ||||||||| ||||||| ||||| |||||||||||||||||||| |
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| T |
9398950 |
cttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactacattgtctatttcttcacgagctttttg |
9399037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 499
Target Start/End: Original strand, 9381425 - 9381612
Alignment:
| Q |
312 |
ttttctgggatcacatagttttcaactttgcattctgctacacatcttcttgtaaccataggaactggtgggtgaagacgaaatgtttctcttatgattg |
411 |
Q |
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||||||||||||||||| ||||||| ||| |||| | ||||||||||| || |||||||| || |||||||| ||||||||||||||| |||| || | |
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| T |
9381425 |
ttttctgggatcacataattttcaattttacattgcgtgacacatcttctagtgaccatagggacgggtgggtgtagacgaaatgtttcttttattatgg |
9381524 |
T |
|
| Q |
412 |
cttgtagatatggcatatttgaaatgtcggattcttcaactgttctgtttttgcctactatgttgtcgatttcttcacgagctttttg |
499 |
Q |
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|||| | ||| || | ||||| | ||| ||||| || ||| ||| ||||| |||||||| ||||| |||||||||||||||||||| |
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| T |
9381525 |
cttgaatataaggaagatttggaccgtcagattcatctactagtctatttttccctactatattgtctatttcttcacgagctttttg |
9381612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 9381179 - 9381309
Alignment:
| Q |
72 |
ttaaaatcaaaacactgaataattgcaccaagcaatgctggcacttcttgcatggctaacgaaacaccaggacacattcttcttccagacccaaatggta |
171 |
Q |
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|
||||||||||| || ||||| || ||||||||||| ||||| ||||||||||| ||||| | ||| ||||||||||| |||||||| ||||||||||| | |
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| T |
9381179 |
ttaaaatcaaagcattgaattatagcaccaagcaaagctggaacttcttgcattgctaaagtaactccaggacacatccttcttcctgacccaaatggca |
9381278 |
T |
|
| Q |
172 |
gaagttgaaaatgttgtcccctaacatcaat |
202 |
Q |
| |
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| T |
9381279 |
aaatctgaaaattttgtcccctcacgtcaat |
9381309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 9398604 - 9398734
Alignment:
| Q |
72 |
ttaaaatcaaaacactgaataattgcaccaagcaatgctggcacttcttgcatggctaacgaaacaccaggacacattcttcttccagacccaaatggta |
171 |
Q |
| |
|
||||||||||| || ||||| || ||||||||||| ||||| ||||||||||| ||||| | ||| ||||||||||| |||||||| ||||||||||| | |
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| T |
9398604 |
ttaaaatcaaagcattgaattatggcaccaagcaaagctggaacttcttgcattgctaaagtaaccccaggacacatccttcttcctgacccaaatggca |
9398703 |
T |
|
| Q |
172 |
gaagttgaaaatgttgtcccctaacatcaat |
202 |
Q |
| |
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|| ||||||| ||| ||||| |||||||| |
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| T |
9398704 |
aaatctgaaaattttgccccctcacatcaat |
9398734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 18104072 - 18104008
Alignment:
| Q |
137 |
accaggacacattcttcttccagacccaaatggtagaagttgaaaatgttgtcccctaacatcaa |
201 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| | ||| | |||||| ||||| ||||||||| |
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| T |
18104072 |
accaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaa |
18104008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 18094063 - 18093998
Alignment:
| Q |
138 |
ccaggacacattcttcttccagacccaaatggtagaagttgaaaatgttgtcccctaacatcaatt |
203 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| | ||| | |||||| ||||| ||||||||||| |
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| T |
18094063 |
ccaggacaaattcttctaccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatt |
18093998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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