View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12998_high_4 (Length: 453)
Name: NF12998_high_4
Description: NF12998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12998_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Original strand, 48414757 - 48415188
Alignment:
| Q |
17 |
cagttgtgacatgcattcagcattttctgcaaatgaatgtagttggcaaatttcaatctttctttcaacacaaactaaaactacatctataataaaattt |
116 |
Q |
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| T |
48414757 |
cagttgtgacatgcattcagcattttctgcaaatgaatgtagttggcaaatttcaatctttctttcaacacaaactaaaactacatctataataaaattt |
48414856 |
T |
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| Q |
117 |
aaataatccttacattaatcttctattctattactgtcactgactagaaaatcttcgacctgttattttctcaatgctggaaacaatggaagattctctc |
216 |
Q |
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| T |
48414857 |
aaataatccttacattaatcttctattctattactgtcactgactagaaaatcttcgacctgttattttctcaatgctggaaacaatggaagattctctc |
48414956 |
T |
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| Q |
217 |
cgtttagcaaaatcacgctcacgtgctttcatcacagcttctctttcgtatatttcactttcttcacgcctccaattttcttccctctgcatcctttctt |
316 |
Q |
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| T |
48414957 |
cgtttagcaaaatcacgctcacgtgctttcatcacagcttctctttcgtatatttcactttcttcccgcctccaattttcttccctctgcatcctttctt |
48415056 |
T |
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| Q |
317 |
tttccattctatcaatcacctccaacaatttattctgaagaacctcttggtgattaaccacagttttggtcaatcttttaaagaacactctcatcaaact |
416 |
Q |
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| T |
48415057 |
tttccattctatcaatcacctccaacaatttattctgaagaacctcttggtgattaaccacagttttggtcaatcttttaaagaacactctcatcaaact |
48415156 |
T |
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| Q |
417 |
catttcttccttcagtctcttcctttgcttct |
448 |
Q |
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| T |
48415157 |
catttcttccttcagtctcttcttttgcttct |
48415188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 48403658 - 48403722
Alignment:
| Q |
65 |
aatttcaatctttctttcaacacaaactaaaactacatctataataaaatttaaataatccttaca |
130 |
Q |
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| T |
48403658 |
aatttcaatctttttttcaacacaaactcaaattgcattta-aataaaattgaaataatacttaca |
48403722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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