View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12998_low_10 (Length: 330)
Name: NF12998_low_10
Description: NF12998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12998_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 16687539 - 16687359
Alignment:
| Q |
20 |
tctatatccttatagagtatatttgcgatcaaaagcaattgaagtttttatttcaattacacttgatcgcagatataccatctcacatatattagtggca |
119 |
Q |
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| T |
16687539 |
tctatatccttatagagtatatttgcgatcaaaagcaattgaagtttttaattcaattacacttgatcgcagatataccatctcacatatattagtggca |
16687440 |
T |
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| Q |
120 |
tacctttatgtaaactcttttttcacaacttatacgtatgatcatcatggctacacttttttcaccaaacacacacatgcataa |
203 |
Q |
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| T |
16687439 |
tacctttatgtaaactcttttttcacaacttatacgtatga---tcatggctacacttttttcaccaaacacacacatgcataa |
16687359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 16687314 - 16687243
Alignment:
| Q |
248 |
agattataaaagctacccttttttctgcacaaaaagttgaacactctccaccttctgtttcaccggtttcat |
319 |
Q |
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| T |
16687314 |
agattataaaagctacccttttttctgcacaaaaagttgaacactctccaccttctgtttcaccggtttcat |
16687243 |
T |
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