View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12998_low_14 (Length: 227)
Name: NF12998_low_14
Description: NF12998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12998_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 27757221 - 27757042
Alignment:
| Q |
18 |
agaaccactatatatgaccaccttagcaagatgaagaacaaccatgttagcgtctctcttagagaactcaacatgagttgtaaacactagattgaacgta |
117 |
Q |
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| T |
27757221 |
agaaccactatatatgaccaccttagcaagatgaagaacaaccatgttagcgtctctcttagagaactcaacatgagttgtaaacactagattgaacgta |
27757122 |
T |
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| Q |
118 |
tgtgatgacacttgttaataacaaaactgaacttagtacaatcttgcataattctattataagcatcacctacaattttggag |
200 |
Q |
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| T |
27757121 |
tgtgatgac---tgttaataacaaaactgaacttagtacaatcttgcataattctattataagcatcacctacaattttggag |
27757042 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 3254005 - 3253905
Alignment:
| Q |
40 |
ttagcaagatgaagaacaaccatgttagcgtctctcttagagaactcaacatgagttgtaaacactagattgaacgtatgtgatgacacttgttaataac |
139 |
Q |
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| T |
3254005 |
ttagcaagatgatgagcaaccacattagcttctctcttagagaattcagcatgagttataaacactagactcaa-atatgtgacgacacttcctaataac |
3253907 |
T |
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| Q |
140 |
aa |
141 |
Q |
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|| |
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| T |
3253906 |
aa |
3253905 |
T |
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