View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12998_low_2 (Length: 560)
Name: NF12998_low_2
Description: NF12998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12998_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 18 - 549
Target Start/End: Original strand, 3846321 - 3846853
Alignment:
| Q |
18 |
agctctctcattcgcttgaaaacnnnnnnnttgatcttggtgatgagaagatgtcgaatctttgttgttttgatcttcaacaaattattatggatgaaat |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3846321 |
agctctctcattcgcttgaaaacaaaaaaattgatcttggtgatgagaagatgtcgaatctttgttgttttgatcttcaacaaattattatggatgaaat |
3846420 |
T |
|
| Q |
118 |
taaggggtcaagattatgatgtatagaggttcgaactaatcttggtgatgcatgacacgtatatggactagctagtaattggataaagccactttcatcc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3846421 |
taaggggtcaagattatgatgtatagaggttcgaactaatcttggtgatgcatgacacgtatatggactagctagtaattggataaagccaatttcatcc |
3846520 |
T |
|
| Q |
218 |
tatcaagcaaactggctagtgcttgtcaaccaatcattttcttttggtctctttggattttaagtctttattagaatctatctacgtgccaattagtcat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3846521 |
tatcaagcaaactggctagtgcttgtcaaccaatcattttcttttggtctctttggattttaagtctttattagaatctatctacgtgccaattagtcat |
3846620 |
T |
|
| Q |
318 |
ttggaccacgcactaaatttgtatatatgtcttacatctattaacagccaatgatttctatgttgactccatcgcaaataagataatcgtgct-nnnnnn |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3846621 |
ttggaccacgcactaaatttgtatatatgtcttacatctattaacaggctatgatttctatgttgactccatcgcaaataagataatcgtgctaaaaaaa |
3846720 |
T |
|
| Q |
417 |
ntttactgttgatatttcttgttatgcggcaattaactactggatgagggtaaaagtgtaatttccccatgtttcataacaaaggctgatgtgggaaaaa |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
3846721 |
atttactgttgatatttcttgttatgcggcaattaactactggatgagggtaaaagtgtaatttccccgtgtttcataacaaaggctgatgtgggaacaa |
3846820 |
T |
|
| Q |
517 |
taagtttccgcaaataatcatgtttgaagtatt |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
3846821 |
caagtttccgcaaataatcatgtttgaagtatt |
3846853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University