View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12998_low_6 (Length: 429)
Name: NF12998_low_6
Description: NF12998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12998_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 9829382 - 9829608
Alignment:
| Q |
17 |
aaaatcaatattgtttccttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgttggaatactttgctgatgctttcccctatgatgt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| |
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| T |
9829382 |
aaaatcaatattgtttccttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgttggaatactttgcagatgcttacccttatgatgt |
9829481 |
T |
|
| Q |
117 |
ctacctgaagatatttcatcattctgacttttgctttcgagtttccttagagtctgtagacggcgccttggcctttgagtgtcaacaaccttgtcaacct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9829482 |
ctacctgaagatatttcatcattctgacttttgctttcgagtttccttagagtctgtagacggcgccttggcctttgagtgtcaacaaccttgtcaacct |
9829581 |
T |
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| Q |
217 |
ctaaattagcagtagttagagagttgt |
243 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
9829582 |
ctaaattagcagtagttagagagttgt |
9829608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 28 - 405
Target Start/End: Original strand, 9755937 - 9756311
Alignment:
| Q |
28 |
tgtttccttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgttggaatactttgctgatgctttcccctatgatgtctacctgaaga |
127 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||| || |||| || |||||| ||| |||| ||||||||||||| |
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| T |
9755937 |
tgtttccttcctcactgtatgtcaaatcctcttctagttcatcatcatcgtttgttgaaaaacttcgccaatgcttgcccttatgccgtctacctgaaga |
9756036 |
T |
|
| Q |
128 |
tatttcatcattctgacttttgctttcgagtttccttagagtctgtagacggcgccttggcctttgagtgtcaacaaccttgtcaacctctaaattagca |
227 |
Q |
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| T |
9756037 |
tatttcatcatcctaacttttgcttccaagtttcctcagagtcagtaagcggtgctttggcatttgagtgtcaacaaccttgtcaacctctaaattagca |
9756136 |
T |
|
| Q |
228 |
gtagttagagagttgtnnnnnnnnnnnnnnnnnnnnngatcactttcagactcactcataacgacattagaatttcgttttctcttggtatttgcagaaa |
327 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
9756137 |
gtagttagagagttgt---tgatatcatcatcatcatgatcactttcagactcactcataacgacgttagaatttcgttttctcttggtatttgcaaaaa |
9756233 |
T |
|
| Q |
328 |
ataagatatcttcaccaaagtccaaattttcctcattgttttgagaatgattgttgtccaagttctttccttttactt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
9756234 |
ataagatatcttcaccaaagtccaaattttcctcattgttaggagaatgattgctgtccaagttctttccttttactt |
9756311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 265 - 410
Target Start/End: Original strand, 9829633 - 9829778
Alignment:
| Q |
265 |
gatcactttcagactcactcataacgacattagaatttcgttttctcttggtatttgcagaaaataagatatcttcaccaaagtccaaattttcctcatt |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9829633 |
gatcactttcagactcactcataacgacattagaatttcgttttctcttggtatttgcagaaaataagatatcttcaccaaagtccaaattttcctcatt |
9829732 |
T |
|
| Q |
365 |
gttttgagaatgattgttgtccaagttctttccttttacttctcca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9829733 |
gttttgagaatgattgttgtccaagttctttccttttacttctcca |
9829778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 34 - 399
Target Start/End: Original strand, 9708563 - 9708925
Alignment:
| Q |
34 |
cttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgttggaatactttgctgatgctttcccctatgatgtctacctgaagatatttc |
133 |
Q |
| |
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|||||||||| |||| | ||||| || ||| ||||||||||||||| |||||||||| ||||||| ||| || ||||| ||||| ||||||| |||| |
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| T |
9708563 |
cttcctcactatatgacaaatccactcctaggtcatcatcatcattttttggaatactctgctgatacttgaccttatgaggtctaactgaagacatttt |
9708662 |
T |
|
| Q |
134 |
atcattctgacttttgctttcgagtttccttagagtctgtagacggcgccttggcctttgagtgtcaacaaccttgtcaacctctaaattagcagtagtt |
233 |
Q |
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|| || | || |||||||| | ||||||||||||||||||||||| ||||||||| ||||| |||| |||||||||||||||||||||||| ||||| |
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| T |
9708663 |
attatcccgatttttgcttacaagtttccttagagtctgtagacgacgccttggcatttgactgtcggtgaccttgtcaacctctaaattagcactagtt |
9708762 |
T |
|
| Q |
234 |
agagagttgtnnnnnnnnnnnnnnnnnnnnngatcactttcagactcactcataacgacattagaatttcgttttctcttggtatttgcagaaaataaga |
333 |
Q |
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| ||||||| |||||||||| ||||| |||||||||||||| || ||||| |||||||||||||||| |||||||| |
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| T |
9708763 |
acagagttg---ctcataccatcatcatcctgatcactttctgactcgctcataacgacattgcaaggccgtttcctcttggtatttgcagtaaataaga |
9708859 |
T |
|
| Q |
334 |
tatcttcaccaaagtccaaattttcctcattgttttgagaatgattgttgtccaagttctttcctt |
399 |
Q |
| |
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||||||||||||||||||| ||||| | ||||||||| | |||||||||||||||||||||||||| |
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| T |
9708860 |
tatcttcaccaaagtccaacttttctttattgttttgggcatgattgttgtccaagttctttcctt |
9708925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 9814225 - 9814270
Alignment:
| Q |
196 |
tgtcaacaaccttgtcaacctctaaattagcagtagttagagagtt |
241 |
Q |
| |
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||||||| ||||||||| |||||||| ||||||||||||||||||| |
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| T |
9814225 |
tgtcaacgaccttgtcatcctctaaagtagcagtagttagagagtt |
9814270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 9755345 - 9755380
Alignment:
| Q |
64 |
attcatcatcatcatttgttggaatactttgctgat |
99 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
9755345 |
attcagcatcatcatttgttggaatactttgctgat |
9755380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 9828820 - 9828855
Alignment:
| Q |
64 |
attcatcatcatcatttgttggaatactttgctgat |
99 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
9828820 |
attcagcatcatcatttgttggaatactttgctgat |
9828855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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