View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12998_low_9 (Length: 350)
Name: NF12998_low_9
Description: NF12998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12998_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 23244821 - 23245091
Alignment:
| Q |
1 |
tgttggtgatattgatgttgatgaacggccaggtttgactgctccaagagttaataatcttctgtgtgt------------------atgtggggccact |
82 |
Q |
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| T |
23244821 |
tgttggtgatattgatgttgatgaacggccaggtttgactgctccaagagttaataatcttctgtgtgttcctgttgagaggacaaaatgtggggccact |
23244920 |
T |
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| Q |
83 |
tgaaattattaatccttggattttagtagatatttgaataacacgtgtaggatgtatgaggtatcatggattcatgtacgtgcttccttttttaatgttg |
182 |
Q |
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| T |
23244921 |
tgaaattattaatccttggattttagtagatatttgaataacacgtgtaggatgtatgaggtatcatggattcatgtacgtgcttccttttttaatgttg |
23245020 |
T |
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| Q |
183 |
ttccatgcatggcacaagtcttaattggattcatgtataaatgaacatcttgtggttcagaaataattgtg |
253 |
Q |
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| T |
23245021 |
ttccatgcatgacacaagtgttaattggattcatgtataaatgaacatcttgtggttcagaaataattgtg |
23245091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 23245118 - 23245185
Alignment:
| Q |
249 |
ttgtgtgtttttccatttaataaaatggcgattttgcaatataatctcctcttgcaagattcaccctc |
316 |
Q |
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| T |
23245118 |
ttgtgtgtttttccatttaataaaatggcgattttgcaatataatctcctcttgcaagattcaccctc |
23245185 |
T |
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