View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12999_high_1 (Length: 652)

Name: NF12999_high_1
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12999_high_1
NF12999_high_1
[»] chr7 (13 HSPs)
chr7 (18-652)||(46537213-46537870)
chr7 (469-652)||(46537905-46538099)
chr7 (205-339)||(46537875-46538009)
chr7 (525-650)||(46538202-46538328)
chr7 (480-648)||(46538376-46538544)
chr7 (205-341)||(46538104-46538242)
chr7 (205-302)||(46538335-46538432)
chr7 (377-445)||(11650575-11650643)
chr7 (377-442)||(11650379-11650444)
chr7 (377-442)||(11650772-11650837)
chr7 (174-232)||(11650596-11650653)
chr7 (174-232)||(11650793-11650850)
chr7 (174-232)||(11650400-11650457)
[»] chr8 (11 HSPs)
chr8 (18-476)||(18437737-18438206)
chr8 (525-650)||(18432843-18432969)
chr8 (205-341)||(18432700-18432836)
chr8 (182-297)||(18437662-18437777)
chr8 (398-535)||(18437912-18438050)
chr8 (540-648)||(18432616-18432725)
chr8 (474-531)||(18437662-18437719)
chr8 (377-442)||(39477112-39477177)
chr8 (377-442)||(44074146-44074211)
chr8 (174-232)||(39477133-39477190)
chr8 (174-232)||(44074133-44074190)
[»] chr4 (13 HSPs)
chr4 (205-334)||(50940860-50940989)
chr4 (481-637)||(50940780-50940947)
chr4 (205-341)||(50940622-50940760)
chr4 (43-136)||(23140737-23140827)
chr4 (377-442)||(22206499-22206564)
chr4 (40-134)||(23140938-23141029)
chr4 (377-446)||(22732947-22733016)
chr4 (174-231)||(22206520-22206576)
chr4 (378-439)||(23142374-23142435)
chr4 (182-232)||(22732976-22733025)
chr4 (174-210)||(23142379-23142415)
chr4 (174-232)||(22202748-22202805)
chr4 (393-442)||(22202743-22202792)
[»] chr6 (4 HSPs)
chr6 (42-165)||(8500002-8500126)
chr6 (377-442)||(30340401-30340466)
chr6 (380-448)||(8500506-8500574)
chr6 (380-442)||(8500696-8500758)
[»] chr5 (5 HSPs)
chr5 (40-136)||(1996536-1996629)
chr5 (377-442)||(1998120-1998185)
chr5 (53-136)||(16057134-16057214)
chr5 (174-210)||(1998128-1998164)
chr5 (43-88)||(14987936-14987981)
[»] chr1 (7 HSPs)
chr1 (377-442)||(19040454-19040519)
chr1 (377-442)||(19040748-19040813)
chr1 (174-229)||(19040444-19040498)
chr1 (174-229)||(19040738-19040792)
chr1 (398-442)||(19040571-19040615)
chr1 (377-442)||(23759492-23759560)
chr1 (290-342)||(17286941-17286993)
[»] chr3 (4 HSPs)
chr3 (46-134)||(33814114-33814199)
chr3 (377-442)||(48608711-48608776)
chr3 (398-442)||(33816002-33816046)
chr3 (174-232)||(48608698-48608755)
[»] scaffold0001 (2 HSPs)
scaffold0001 (174-231)||(406759-406815)
scaffold0001 (398-446)||(406759-406807)
[»] chr2 (3 HSPs)
chr2 (377-442)||(9792954-9793019)
chr2 (377-442)||(43783221-43783286)
chr2 (174-232)||(9792975-9793032)


Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 652
Target Start/End: Original strand, 46537213 - 46537870
Alignment:
Q  18 gcatcaataaaattgatttagaaatttgactgtcatccatgtaacatttcaaattttaaatatttatgaaatttgttaatgatatttgattgtgaatgat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46537213 gcatcaataaaattgatttagaaatttgactgtcatccatgtaatatttcaaattttaaatatttataaaatttgttaatgatatttgattgtgaatgat 46537312  T
Q  118 agaaacttattgctcattaacggtatataacgaatagtaattatgcataatgctacttaatgctaatttaaaacgaataacacacttttaatggcaattg 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| ||||||||||| ||| |||||||| ||||||    
T  46537313 agaaacttattgctcattaacggtatataacaaatagtaattatgcataatgctacttagtgttaattaaaaacgaataatacatttttaatg-caattg 46537411  T
Q  218 agaacgtag----ttaatggca--tgaaaacgtagttaatggcaattaaaaactttcaaggtgcatattttcgtgtaggaattgcttttaattgatttta 311  Q
    | |||| |     |||||||||  ||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46537412 aaaacgaacatttttaatggcaattgagaacatagttaatggcaattgaaaactttcaaggtgcatattttcgtgtaggaattgcttttaattgatttta 46537511  T
Q  312 tgcatcatgcaataattcctctaccaattacggcctattaaaatcaatatattctcaaatgtgagattttctctcctataacttaattaatgttaattaa 411  Q
    ||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  46537512 tgcattatgcactaattcctctaccaattaaggcctattaaaatcaatatattctcaaatgcgagattttctctcctataacttacttaatgttaattaa 46537611  T
Q  412 aaacgaataacacatttttaatgcaattgaaaacgaatgacacactactaatgacaattgagaacgta--------------------gttaatgacaat 491  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |  ||||| ||||||||||||||                    ||||||||||||    
T  46537612 aaacgaataacacacttttaatgcaattgaaaacgaatgacacaatgttaatggcaattgagaacgtagttaatggcttgaaaacgttgttaatgacaat 46537711  T
Q  492 tgaaaacttttaatttgcatattttcgtacatgaattgcttttatgtcttatgcactaatcactctaccaattactagctattaaaagcaattatgacgt 591  Q
    ||||||||||||| ||||||||||||||| | ||||||||||||||  |||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  46537712 tgaaaacttttaagttgcatattttcgtataggaattgcttttatgcattatgcactaatcactctaccaattattatctattaaaagcaattatgacgt 46537811  T
Q  592 acttatttcaaaaataaacacgtatcaagattgattcgatttttaatggtaattatgacgt 652  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  46537812 acttatttcaaaaataa--acgtatcaaggttgattcgatttttaatggtaattatgacgt 46537870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 469 - 652
Target Start/End: Original strand, 46537905 - 46538099
Alignment:
Q  469 ttgagaacgtagttaatgacaattgaaaacttttaatttgcatattttcgtacatgaattg----------cttttatgtcttatgcactaatcactcta 558  Q
    |||| ||||| ||||||| ||||||||||||||||| ||||||||||||||| | ||||||          ||||||||  |||||||||||| ||||||    
T  46537905 ttgaaaacgtcgttaatggcaattgaaaacttttaagttgcatattttcgtataggaattgatttaaattgcttttatgcattatgcactaattactcta 46538004  T
Q  559 ccaattactagctattaaa-agcaattatgacgtacttatttcaaaaataaacacgtatcaagattgattcgatttttaatggtaattatgacgt 652  Q
    ||||| | || || ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||    
T  46538005 ccaatcattacctgttaaagagcaattatgacgtacttatttcaaaaataaacacgtatcaaggttgattcgatttttaatagtaattgtgacgt 46538099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 205 - 339
Target Start/End: Original strand, 46537875 - 46538009
Alignment:
Q  205 ttaatggcaattgagaacgtagttaatggcatgaaaacgtagttaatggcaattaaaaactttcaaggtgcatattttcgtgtaggaattgcttttaatt 304  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| ||| ||||||||||||| ||||||||| ||| ||||    
T  46537875 ttaatggcaattgagaacgtagttaatggcttgaaaacgtcgttaatggcaattgaaaacttttaagttgcatattttcgtataggaattgatttaaatt 46537974  T
Q  305 gattttatgcatcatgcaataattcctctaccaat 339  Q
    | |||||||||| ||||| ||||| ||||||||||    
T  46537975 gcttttatgcattatgcactaattactctaccaat 46538009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 525 - 650
Target Start/End: Original strand, 46538202 - 46538328
Alignment:
Q  525 aattgcttttatgtcttatgcactaatcactctaccaattactagctattaaaa-gcaattatgacgtacttatttcaaaaataaacacgtatcaagatt 623  Q
    ||||| |||||||  |||||||||||| ||||||||||||| || || |||||| | ||||||||||||||||||| |||||||||||||||||||| ||    
T  46538202 aattgtttttatgcattatgcactaattactctaccaattattacctcttaaaaagtaattatgacgtacttatttaaaaaataaacacgtatcaaggtt 46538301  T
Q  624 gattcgatttttaatggtaattatgac 650  Q
    |||| |||||||||| |||||||||||    
T  46538302 gatttgatttttaatagtaattatgac 46538328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 480 - 648
Target Start/End: Original strand, 46538376 - 46538544
Alignment:
Q  480 gttaatgacaattgaaaacttttaatttgcatattttcgtacatgaattgcttttatgtcttatgcactaatcactctaccaattactagctattaaaa- 578  Q
    ||||||| ||||| ||||||||||| ||||||||||||||| | ||||||||||||   | ||||||||||| | |||| |||||| || || ||||||     
T  46538376 gttaatggcaattcaaaacttttaagttgcatattttcgtataggaattgcttttaac-catatgcactaattattctatcaattattacctgttaaaaa 46538474  T
Q  579 gcaattatgacgtacttatttcaaaaataaacacgtatcaagattgattcgatttttaatggtaattatg 648  Q
    |||||||||||||||||||||||||||| |||| |||||||| || | |||||||| ||| |||||||||    
T  46538475 gcaattatgacgtacttatttcaaaaattaacatgtatcaaggttaagtcgattttgaatagtaattatg 46538544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 205 - 341
Target Start/End: Original strand, 46538104 - 46538242
Alignment:
Q  205 ttaatggcaattgagaacgtagttaatggcatgaaaacgtagttaatggcaattaaaaacttt--caaggtgcatattttcgtgtaggaattgcttttaa 302  Q
    |||||||||||||||||||||||||||||| |||||| || |||||| |||||| ||||||||   ||   |||||||||||| |||||| |||||| ||    
T  46538104 ttaatggcaattgagaacgtagttaatggcttgaaaatgtcgttaattgcaattgaaaacttttataaaaggcatattttcgtataggaaatgctttaaa 46538203  T
Q  303 ttgattttatgcatcatgcaataattcctctaccaatta 341  Q
    ||| |||||||||| ||||| ||||| ||||||||||||    
T  46538204 ttgtttttatgcattatgcactaattactctaccaatta 46538242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 205 - 302
Target Start/End: Original strand, 46538335 - 46538432
Alignment:
Q  205 ttaatggcaattgagaacgtagttaatggcatgaaaacgtagttaatggcaattaaaaactttcaaggtgcatattttcgtgtaggaattgcttttaa 302  Q
    |||||||||||||||||||||| |||| || | |||| || ||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||    
T  46538335 ttaatggcaattgagaacgtagataatagcttaaaaaggtcgttaatggcaattcaaaacttttaagttgcatattttcgtataggaattgcttttaa 46538432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 377 - 445
Target Start/End: Original strand, 11650575 - 11650643
Alignment:
Q  377 attttctctcctataacttaattaatgttaattaaaaacgaataacacatttttaatgcaattgaaaac 445  Q
    |||||||||| ||||||||| |||||| ||||| ||||||||||||||| |||||||||||||||||||    
T  11650575 attttctctcatataacttagttaatgctaattgaaaacgaataacacacttttaatgcaattgaaaac 11650643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 442
Target Start/End: Original strand, 11650379 - 11650444
Alignment:
Q  377 attttctctcctataacttaattaatgttaattaaaaacgaataacacatttttaatgcaattgaa 442  Q
    |||||||||| ||||||||| ||||||  |||| ||||||||||||||| ||||||||||||||||    
T  11650379 attttctctcatataacttagttaatgccaattgaaaacgaataacacacttttaatgcaattgaa 11650444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 442
Target Start/End: Original strand, 11650772 - 11650837
Alignment:
Q  377 attttctctcctataacttaattaatgttaattaaaaacgaataacacatttttaatgcaattgaa 442  Q
    |||||||||| ||||| ||| |||||| ||||| ||||||||||||||| ||||||||||||||||    
T  11650772 attttctctcatataaattagttaatgctaattgaaaacgaataacacacttttaatgcaattgaa 11650837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 11650596 - 11650653
Alignment:
Q  174 ttaatgctaatttaaaacgaataacacacttttaatggcaattgagaacgtagttaatg 232  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| ||| |||||||||    
T  11650596 ttaatgctaattgaaaacgaataacacacttttaat-gcaattgaaaacatagttaatg 11650653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 11650793 - 11650850
Alignment:
Q  174 ttaatgctaatttaaaacgaataacacacttttaatggcaattgagaacgtagttaatg 232  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||  ||||||||||||    
T  11650793 ttaatgctaattgaaaacgaataacacacttttaat-gcaattgaagacgtagttaatg 11650850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 11650400 - 11650457
Alignment:
Q  174 ttaatgctaatttaaaacgaataacacacttttaatggcaattgagaacgtagttaatg 232  Q
    ||||||| |||| ||||||||||||||||||||||| ||||||||  ||||||||||||    
T  11650400 ttaatgccaattgaaaacgaataacacacttttaat-gcaattgaagacgtagttaatg 11650457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 476
Target Start/End: Complemental strand, 18438206 - 18437737
Alignment:
Q  18 gcatcaataaaattgatttagaaatttgactgtcatccatgtaacatttcaaattttaaatatttatgaaatttgttaatgatatttgattgtgaatgat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18438206 gcatcaataaaattgatttagaaatttgactgtcatccatgtaacatttcaaattttaaatatttatggaatttgttaatgatatttgattgtgaatgat 18438107  T
Q  118 agaaacttattgctcattaacggtatataacgaatagtaattatgcataatgctacttaatgctaatttaaaacgaataacacacttttaatggcaattg 217  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||    
T  18438106 agaaacttattgctcatttacggtatataatgaatagtaattatgcataatgctacttaatgctaattaaaaacgaataacacacttttaatgaaaattg 18438007  T
Q  218 agaacgta---------gttaatggca--tgaaaacgtagttaatggcaattaaaaactttcaaggtgcatattttcgtgtaggaattgcttttaattga 306  Q
    | |||| |          |||||||||  ||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  18438006 aaaacgaatgagacaattttaatggcaattgagaacatagttaatggcaattaaaaactttcaaggtgcatattttcgtataggaattgcttttaattgt 18437907  T
Q  307 ttttatgcatcatgcaataattcctctaccaattacggcctattaaaatcaatatattctcaaatgtgagattttctctcctataacttaattaatgtta 406  Q
    ||||||||||  |||| |||||||||| ||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||    
T  18437906 ttttatgcattgtgcactaattcctcttccaattacgccctattaaaatcaatctattctcaaatgcgagattttctctcctataacttacttaatgtta 18437807  T
Q  407 attaaaaacgaataacacatttttaatgcaattgaaaacgaatgacacactactaatgacaattgagaac 476  Q
    |||||||| ||||||| || ||||||||||||| ||||||||||||||| |  ||||| |||||||||||    
T  18437806 attaaaaatgaataacgcacttttaatgcaattaaaaacgaatgacacattgttaatggcaattgagaac 18437737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 525 - 650
Target Start/End: Complemental strand, 18432969 - 18432843
Alignment:
Q  525 aattgcttttatgtcttatgcactaatcactctaccaattactagctattaaaa-gcaattatgacgtacttatttcaaaaataaacacgtatcaagatt 623  Q
    |||||||||||||  |||||||||||| ||||||||||||| || || |||||| | ||||||||||||||||||||||||||||||| |||||||| ||    
T  18432969 aattgcttttatgcattatgcactaattactctaccaattattacctgttaaaaagaaattatgacgtacttatttcaaaaataaacatgtatcaaggtt 18432870  T
Q  624 gattcgatttttaatggtaattatgac 650  Q
    ||||||||||||||| |||||||||||    
T  18432869 gattcgatttttaatagtaattatgac 18432843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 205 - 341
Target Start/End: Complemental strand, 18432836 - 18432700
Alignment:
Q  205 ttaatggcaattgagaacgtagttaatggcatgaaaacgtagttaatggcaattaaaaactttcaaggtgcatattttcgtgtaggaattgcttttaatt 304  Q
    ||||||||||||||||||||||||||| || ||||||| | |||||||| |||| | |||||| |||| |||||||||||| ||||||||||||| ||||    
T  18432836 ttaatggcaattgagaacgtagttaatagcttgaaaacatcgttaatggaaattgagaacttttaaggagcatattttcgtttaggaattgctttaaatt 18432737  T
Q  305 gattttatgcatcatgcaataattcctctaccaatta 341  Q
    | |||||  ||| ||||| ||||| ||||||||||||    
T  18432736 gcttttaaccattatgcactaattactctaccaatta 18432700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 182 - 297
Target Start/End: Complemental strand, 18437777 - 18437662
Alignment:
Q  182 aatttaaaacgaataacacacttttaatggcaattgagaacgtagttaatggcatgaaaacgtagttaatggcaattaaaaactttcaaggtgcatattt 281  Q
    |||| ||||||||| ||||| | |||||||||||||||||| || |||| ||| ||||||||||||||||||||||| |||||||| ||| |||||||||    
T  18437777 aattaaaaacgaatgacacattgttaatggcaattgagaacatatttaagggcttgaaaacgtagttaatggcaattgaaaacttttaagttgcatattt 18437678  T
Q  282 tcgtgtaggaattgct 297  Q
    |||| |||||||||||    
T  18437677 tcgtataggaattgct 18437662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 398 - 535
Target Start/End: Complemental strand, 18438050 - 18437912
Alignment:
Q  398 ttaatgttaattaaaaacgaataacacatttttaatgcaa-ttgaaaacgaatgacacactactaatgacaattgagaacgtagttaatgacaattgaaa 496  Q
    |||||| ||||||||||||||||||||| |||||||| || |||||||||||||| ||| |  ||||| ||||||||||| ||||||||| ||||| |||    
T  18438050 ttaatgctaattaaaaacgaataacacacttttaatgaaaattgaaaacgaatgagacaattttaatggcaattgagaacatagttaatggcaattaaaa 18437951  T
Q  497 acttttaatttgcatattttcgtacatgaattgctttta 535  Q
    ||||| ||  |||||||||||||| | ||||||||||||    
T  18437950 actttcaaggtgcatattttcgtataggaattgctttta 18437912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 540 - 648
Target Start/End: Complemental strand, 18432725 - 18432616
Alignment:
Q  540 ttatgcactaatcactctaccaattactagctattaaaa-gcaattatgacgtacttatttcaaaaataaacacgtatcaagattgattcgatttttaat 638  Q
    |||||||||||| ||||||||||||| || || |||||| |||||||||||||||||||||||||||| |||| |||||||| || | |||||||| |||    
T  18432725 ttatgcactaattactctaccaattattatctgttaaaaagcaattatgacgtacttatttcaaaaattaacatgtatcaaggttaagtcgattttaaat 18432626  T
Q  639 ggtaattatg 648  Q
     |||||||||    
T  18432625 agtaattatg 18432616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 531
Target Start/End: Complemental strand, 18437719 - 18437662
Alignment:
Q  474 aacgtagttaatgacaattgaaaacttttaatttgcatattttcgtacatgaattgct 531  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||| | ||||||||    
T  18437719 aacgtagttaatggcaattgaaaacttttaagttgcatattttcgtataggaattgct 18437662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 442
Target Start/End: Original strand, 39477112 - 39477177
Alignment:
Q  377 attttctctcctataacttaattaatgttaattaaaaacgaataacacatttttaatgcaattgaa 442  Q
    |||||||||| ||||||||| ||||||  |||| ||||||||||||||| ||||||||||||||||    
T  39477112 attttctctcatataacttagttaatgccaattgaaaacgaataacacacttttaatgcaattgaa 39477177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 44074211 - 44074146
Alignment:
Q  377 attttctctcctataacttaattaatgttaattaaaaacgaataacacatttttaatgcaattgaa 442  Q
    |||| ||||| ||||||||| |||||| ||||| |||| |||||||||| ||||||||||||||||    
T  44074211 atttactctcatataacttagttaatgctaattgaaaatgaataacacacttttaatgcaattgaa 44074146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 39477133 - 39477190
Alignment:
Q  174 ttaatgctaatttaaaacgaataacacacttttaatggcaattgagaacgtagttaatg 232  Q
    ||||||| |||| ||||||||||||||||||||||| ||||||||  ||||||||||||    
T  39477133 ttaatgccaattgaaaacgaataacacacttttaat-gcaattgaagacgtagttaatg 39477190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 44074190 - 44074133
Alignment:
Q  174 ttaatgctaatttaaaacgaataacacacttttaatggcaattgagaacgtagttaatg 232  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||  ||||||||||||    
T  44074190 ttaatgctaattgaaaatgaataacacacttttaat-gcaattgaagacgtagttaatg 44074133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 8e-29; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 205 - 334
Target Start/End: Complemental strand, 50940989 - 50940860
Alignment:
Q  205 ttaatggcaattgagaacgtagttaatggcatgaaaacgtagttaatggcaattaaaaactttcaaggtgcatattttcgtgtaggaattgcttttaatt 304  Q
    ||||||||||||||||| |||||||  ||| |||||||||  |||||||||||| |||||||| ||| ||||||||||||| ||||||||| ||| ||||    
T  50940989 ttaatggcaattgagaatgtagttataggcttgaaaacgtctttaatggcaattgaaaacttttaagttgcatattttcgtataggaattgttttaaatt 50940890  T
Q  305 gattttatgcatcatgcaataattcctcta 334  Q
    | |||||||||| ||||| ||||| |||||    
T  50940889 gcttttatgcattatgcactaattactcta 50940860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 481 - 637
Target Start/End: Complemental strand, 50940947 - 50940780
Alignment:
Q  481 ttaatgacaattgaaaacttttaatttgcatattttcgtacatgaattg----------cttttatgtcttatgcactaatcactctaccaattactagc 570  Q
    |||||| ||||||||||||||||| ||||||||||||||| | ||||||          ||||||||  |||||||||||| |||||| || | | || |    
T  50940947 ttaatggcaattgaaaacttttaagttgcatattttcgtataggaattgttttaaattgcttttatgcattatgcactaattactctaacagtcattacc 50940848  T
Q  571 tattaaa-agcaattatgacgtacttatttcaaaaataaacacgtatcaagattgattcgatttttaa 637  Q
      ||||| |||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  50940847 ggttaaagagcaattatgacgtacttatttcaaaaataaacatgtatcaaagttgattcgatttttaa 50940780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 205 - 341
Target Start/End: Complemental strand, 50940760 - 50940622
Alignment:
Q  205 ttaatggcaattgagaacgtagttaatggcatgaaaacgtagttaatggcaattaaaaactttcaagg--tgcatattttcgtgtaggaattgcttttaa 302  Q
    ||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| |||||||| |  |   |||| ||||||| || ||| || ||| ||    
T  50940760 ttaatggcaattgtgaacgtagttaatggcttgaaaacgtcgttaatggcaattgaaaacttttatagaaggcatgttttcgtataagaaatgttttaaa 50940661  T
Q  303 ttgattttatgcatcatgcaataattcctctaccaatta 341  Q
    ||| |||||||||| | ||| ||||| ||||||||||||    
T  50940660 ttgcttttatgcattaagcactaattactctaccaatta 50940622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 23140827 - 23140737
Alignment:
Q  43 ttgactgtcatccatgtaacatttcaaattttaaatatttatgaaatttgttaatgatatttgattgtgaatgatagaaacttattgctcatta 136  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||    |||||||||||| ||||||||| | | |||||||||||||||||    
T  23140827 ttgactgtcatccatgtaacaagtcaaatttcaaatatttatgaaa---cttaatgatatttcattgtgaataaaataaacttattgctcatta 23140737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 377 - 442
Target Start/End: Original strand, 22206499 - 22206564
Alignment:
Q  377 attttctctcctataacttaattaatgttaattaaaaacgaataacacatttttaatgcaattgaa 442  Q
    |||||||||| ||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||    
T  22206499 attttctctcatataacttagttaatgctaattgaaaacgaataacacacttttaatgcaattgaa 22206564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 23141029 - 23140938
Alignment:
Q  40 aatttgactgtcatccatgtaacatttcaaattttaaatatttatgaaatttgttaatgatatttgattgtgaatgatagaaacttattgctcat 134  Q
    ||||||| ||||||||||||||||  |||||||| ||||||||||||||    |||||||| ||| ||||||||| | |||||||||||||||||    
T  23141029 aatttgattgtcatccatgtaacaagtcaaatttcaaatatttatgaaa---cttaatgatgtttcattgtgaataaaagaaacttattgctcat 23140938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 446
Target Start/End: Original strand, 22732947 - 22733016
Alignment:
Q  377 attttctctcctataacttaattaatgttaattaaaaacgaataacacatttttaatgcaattgaaaacg 446  Q
    |||||||||| ||||||||| |||||   |||| ||||||||||||||| ||||||||||||||||||||    
T  22732947 attttctctcatataacttagttaataccaattgaaaacgaataacacacttttaatgcaattgaaaacg 22733016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 22206520 - 22206576
Alignment:
Q  174 ttaatgctaatttaaaacgaataacacacttttaatggcaattgagaacgtagttaat 231  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||||    
T  22206520 ttaatgctaattgaaaacgaataacacacttttaat-gcaattgaagacgtagttaat 22206576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 23142435 - 23142374
Alignment:
Q  378 ttttctctcctataacttaattaatgttaattaaaaacgaataacacatttttaatgcaatt 439  Q
    ||||||||  ||||||||| |||||| ||||| ||||||||||||||| |||||||||||||    
T  23142435 ttttctctgatataacttagttaatgctaattgaaaacgaataacacacttttaatgcaatt 23142374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 22732976 - 22733025
Alignment:
Q  182 aatttaaaacgaataacacacttttaatggcaattgagaacgtagttaatg 232  Q
    |||| ||||||||||||||||||||||| |||||||| |||||||||||||    
T  22732976 aattgaaaacgaataacacacttttaat-gcaattgaaaacgtagttaatg 22733025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 23142415 - 23142379
Alignment:
Q  174 ttaatgctaatttaaaacgaataacacacttttaatg 210  Q
    |||||||||||| ||||||||||||||||||||||||    
T  23142415 ttaatgctaattgaaaacgaataacacacttttaatg 23142379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 22202748 - 22202805
Alignment:
Q  174 ttaatgctaatttaaaacgaataacacacttttaatggcaattgagaacgtagttaatg 232  Q
    |||||||||| | ||||||||||||||||||||||| ||||||||  | ||||||||||    
T  22202748 ttaatgctaaatgaaaacgaataacacacttttaat-gcaattgaatatgtagttaatg 22202805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 22202743 - 22202792
Alignment:
Q  393 cttaattaatgttaattaaaaacgaataacacatttttaatgcaattgaa 442  Q
    |||| |||||| ||| | ||||||||||||||| ||||||||||||||||    
T  22202743 cttagttaatgctaaatgaaaacgaataacacacttttaatgcaattgaa 22202792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 42 - 165
Target Start/End: Complemental strand, 8500126 - 8500002
Alignment:
Q  42 tttgactgtcatccatgtaacatt-tcaaattttaaatatttatgaaatttgttaatgatatttgattgtgaatgatagaaacttattgctcattaacgg 140  Q
    |||||||||| |||||||||||   |||||||| | |||||||||||||   ||| |||||||| ||||||||| | | |||||||||||||||||||||    
T  8500126 tttgactgtcctccatgtaacaaagtcaaatttcatatatttatgaaatagattattgatatttcattgtgaataaaataaacttattgctcattaacgg 8500027  T
Q  141 tatataacgaatagtaattatgcat 165  Q
    ||||||| |||||||||||||||||    
T  8500026 tatataatgaatagtaattatgcat 8500002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 30340466 - 30340401
Alignment:
Q  377 attttctctcctataacttaattaatgttaattaaaaacgaataacacatttttaatgcaattgaa 442  Q
    |||||||||| ||||| ||||||||||| |||| ||||||||||||||| ||| ||||||||||||    
T  30340466 attttctctcatataatttaattaatgtcaattgaaaacgaataacacactttgaatgcaattgaa 30340401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 448
Target Start/End: Complemental strand, 8500574 - 8500506
Alignment:
Q  380 ttctctcctataacttaattaatgttaattaaaaacgaataacacatttttaatgcaattgaaaacgaa 448  Q
    ||||||| ||||||||| |||| | ||||| |||||| ||||||||  ||||||||||||||| |||||    
T  8500574 ttctctcatataacttagttaacgctaattgaaaacgtataacacacgtttaatgcaattgaagacgaa 8500506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 380 - 442
Target Start/End: Complemental strand, 8500758 - 8500696
Alignment:
Q  380 ttctctcctataacttaattaatgttaattaaaaacgaataacacatttttaatgcaattgaa 442  Q
    ||||||| ||||||| | |||||| ||||| |||||| |||| ||| ||||||||||||||||    
T  8500758 ttctctcatataactaagttaatgctaattgaaaacgtataatacacttttaatgcaattgaa 8500696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 1996629 - 1996536
Alignment:
Q  40 aatttgactgtcatccatgtaacatttcaaattttaaatatttatgaaatttgttaatgatatttgattgtgaatgatagaaacttattgctcatta 136  Q
    ||||||||||||||||||||||||  |||||||| ||||||||||||||    |||||||| ||| ||||||||| | ||||||||||||| |||||    
T  1996629 aatttgactgtcatccatgtaacaagtcaaatttcaaatatttatgaaa---cttaatgatgtttcattgtgaataaaagaaacttattgcacatta 1996536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 1998185 - 1998120
Alignment:
Q  377 attttctctcctataacttaattaatgttaattaaaaacgaataacacatttttaatgcaattgaa 442  Q
    |||||||||| ||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||    
T  1998185 attttctctcatataacttagttaatgctaattgaaaacgaataacacacttttaatgcaattgaa 1998120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 16057214 - 16057134
Alignment:
Q  53 tccatgtaacatttcaaattttaaatatttatgaaatttgttaatgatatttgattgtgaatgatagaaacttattgctcatta 136  Q
    |||||||||||  |||||||| ||||||||||||   || |||||||||||| ||||||||| | | |||||||||||||||||    
T  16057214 tccatgtaacaagtcaaatttcaaatatttatga---ttcttaatgatatttcattgtgaataaaataaacttattgctcatta 16057134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 1998164 - 1998128
Alignment:
Q  174 ttaatgctaatttaaaacgaataacacacttttaatg 210  Q
    |||||||||||| ||||||||||||||||||||||||    
T  1998164 ttaatgctaattgaaaacgaataacacacttttaatg 1998128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 14987936 - 14987981
Alignment:
Q  43 ttgactgtcatccatgtaacatttcaaattttaaatatttatgaaa 88  Q
    |||||||||||||||||||||  |||| ||| ||||||||||||||    
T  14987936 ttgactgtcatccatgtaacaagtcaactttcaaatatttatgaaa 14987981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 19040519 - 19040454
Alignment:
Q  377 attttctctcctataacttaattaatgttaattaaaaacgaataacacatttttaatgcaattgaa 442  Q
    |||||||||| ||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||    
T  19040519 attttctctcatataacttagttaatgctaattgaaaacgaataacacacttttaatgcaattgaa 19040454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 19040813 - 19040748
Alignment:
Q  377 attttctctcctataacttaattaatgttaattaaaaacgaataacacatttttaatgcaattgaa 442  Q
    |||||||||| ||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||    
T  19040813 attttctctcatataacttagttaatgctaattgaaaacgaataacacacttttaatgcaattgaa 19040748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 19040498 - 19040444
Alignment:
Q  174 ttaatgctaatttaaaacgaataacacacttttaatggcaattgagaacgtagtta 229  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||    
T  19040498 ttaatgctaattgaaaacgaataacacacttttaat-gcaattgaagacgtagtta 19040444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 19040792 - 19040738
Alignment:
Q  174 ttaatgctaatttaaaacgaataacacacttttaatggcaattgagaacgtagtta 229  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||    
T  19040792 ttaatgctaattgaaaacgaataacacacttttaat-gcaattgaagacgtagtta 19040738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 442
Target Start/End: Complemental strand, 19040615 - 19040571
Alignment:
Q  398 ttaatgttaattaaaaacgaataacacatttttaatgcaattgaa 442  Q
    ||||||| |||| ||||||||||||||| ||||||||||||||||    
T  19040615 ttaatgtcaattgaaaacgaataacacacttttaatgcaattgaa 19040571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 442
Target Start/End: Original strand, 23759492 - 23759560
Alignment:
Q  377 attttctctcctataacttaattaatgttaattaaaaacgaat---aacacatttttaatgcaattgaa 442  Q
    |||||||||| ||||||||| ||||||  |||| |||||||||   |||||| ||||||||||||||||    
T  23759492 attttctctcatataacttagttaatgccaattgaaaacgaataacaacacacttttaatgcaattgaa 23759560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 17286941 - 17286993
Alignment:
Q  290 gaattgcttttaattgattttatgcatcatgcaataattcctctaccaattac 342  Q
    |||||||||||||||| |||||||||  ||||| ||||| |||| ||||||||    
T  17286941 gaattgcttttaattgcttttatgcagtatgcactaattgctctgccaattac 17286993  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 33814199 - 33814114
Alignment:
Q  46 actgtcatccatgtaacatttcaaattttaaatatttatgaaatttgttaatgatatttgattgtgaatgatagaaacttattgctcat 134  Q
    ||||||||||||||||||  |||||||| ||||||||||||||    |||||||| ||| ||||||||| | |||||||||||||||||    
T  33814199 actgtcatccatgtaacaaatcaaatttcaaatatttatgaaa---cttaatgatgtttcattgtgaataaaagaaacttattgctcat 33814114  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 48608776 - 48608711
Alignment:
Q  377 attttctctcctataacttaattaatgttaattaaaaacgaataacacatttttaatgcaattgaa 442  Q
    |||||||||| ||||||||| ||||||  |||| ||||||||||||||| ||||||||||||||||    
T  48608776 attttctctcatataacttagttaatgcaaattgaaaacgaataacacacttttaatgcaattgaa 48608711  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 398 - 442
Target Start/End: Complemental strand, 33816046 - 33816002
Alignment:
Q  398 ttaatgttaattaaaaacgaataacacatttttaatgcaattgaa 442  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||    
T  33816046 ttaatgtcaattgaaaacgaataacacatttttaatgcaattgaa 33816002  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 48608755 - 48608698
Alignment:
Q  174 ttaatgctaatttaaaacgaataacacacttttaatggcaattgagaacgtagttaatg 232  Q
    ||||||| |||| ||||||||||||||||||||||| ||||||||  ||||||||||||    
T  48608755 ttaatgcaaattgaaaacgaataacacacttttaat-gcaattgaagacgtagttaatg 48608698  T

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Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 406759 - 406815
Alignment:
Q  174 ttaatgctaatttaaaacgaataacacacttttaatggcaattgagaacgtagttaat 231  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||    
T  406759 ttaatgctaattgaaaacgaataacacacttttaat-gcaattgaaaacgtagttaat 406815  T

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Target: scaffold0001; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 398 - 446
Target Start/End: Original strand, 406759 - 406807
Alignment:
Q  398 ttaatgttaattaaaaacgaataacacatttttaatgcaattgaaaacg 446  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||||||    
T  406759 ttaatgctaattgaaaacgaataacacacttttaatgcaattgaaaacg 406807  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 442
Target Start/End: Original strand, 9792954 - 9793019
Alignment:
Q  377 attttctctcctataacttaattaatgttaattaaaaacgaataacacatttttaatgcaattgaa 442  Q
    ||||| |||| ||||||||| ||||||  |||| ||||||||||||||| ||||||||||||||||    
T  9792954 attttttctcatataacttagttaatgccaattgaaaacgaataacacacttttaatgcaattgaa 9793019  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 442
Target Start/End: Original strand, 43783221 - 43783286
Alignment:
Q  377 attttctctcctataacttaattaatgttaattaaaaacgaataacacatttttaatgcaattgaa 442  Q
    |||||||||| ||||||||| ||||||  |||| |||| |||||||||| ||||||||||||||||    
T  43783221 attttctctcatataacttagttaatgccaattgaaaatgaataacacacttttaatgcaattgaa 43783286  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 9792975 - 9793032
Alignment:
Q  174 ttaatgctaatttaaaacgaataacacacttttaatggcaattgagaacgtagttaatg 232  Q
    ||||||| |||| ||||||||||||||||||||||| ||||||||  ||||||||||||    
T  9792975 ttaatgccaattgaaaacgaataacacacttttaat-gcaattgaatacgtagttaatg 9793032  T

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