View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12999_high_13 (Length: 342)

Name: NF12999_high_13
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12999_high_13
NF12999_high_13
[»] chr7 (6 HSPs)
chr7 (142-324)||(43119123-43119298)
chr7 (1-145)||(43119647-43119792)
chr7 (1-106)||(43119461-43119566)
chr7 (104-147)||(43119322-43119366)
chr7 (152-188)||(49013049-49013085)
chr7 (198-230)||(38177747-38177779)
[»] chr8 (1 HSPs)
chr8 (144-230)||(25105711-25105797)
[»] chr4 (3 HSPs)
chr4 (142-229)||(8019961-8020048)
chr4 (149-186)||(7593144-7593181)
chr4 (150-207)||(8019528-8019585)
[»] chr6 (2 HSPs)
chr6 (142-230)||(21917346-21917434)
chr6 (149-219)||(18239246-18239315)
[»] chr2 (6 HSPs)
chr2 (151-230)||(8442616-8442695)
chr2 (149-227)||(3960856-3960934)
chr2 (142-224)||(26674105-26674187)
chr2 (156-186)||(37940462-37940492)
chr2 (142-230)||(22311667-22311755)
chr2 (142-182)||(36168676-36168716)
[»] chr3 (2 HSPs)
chr3 (161-229)||(18391942-18392010)
chr3 (155-218)||(54697932-54697995)
[»] scaffold0236 (1 HSPs)
scaffold0236 (149-207)||(16928-16986)
[»] chr5 (1 HSPs)
chr5 (152-180)||(15069748-15069776)
[»] chr1 (2 HSPs)
chr1 (142-182)||(23998908-23998948)
chr1 (142-230)||(27580744-27580832)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 142 - 324
Target Start/End: Complemental strand, 43119298 - 43119123
Alignment:
Q  142 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactccttactcattc 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       |||    
T  43119298 aaatatatgcatttatatcatgtatttactacaaaactatagtaatgaatgttgccatttattttaaaaaatggagagaatctcaactcc-------ttc 43119206  T
Q  242 aaagaaataaaactcactactctcacaaataatccggccactcttcttcgcattcaatttcgttgttttcgtatacaccgact 324  Q
    ||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43119205 aaagaaataaaactcgctactctcagtaataatccggccactcttcttcgcattcaatttcgttgtttttgtatacaccgact 43119123  T

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Target: chr7; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 43119792 - 43119647
Alignment:
Q  1 gaaggagagttgaaagaagaggattcaggtctggtaggtgggcacgacgatcatcattcatcaatgttttattcacgagtgtagatcatctctattactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  43119792 gaaggagagttgaaagaagaggattcaggtctggtaggtgggcacgacgatcatcattcataaatgttttattcacgagtgtagatcatttctattactt 43119693  T
Q  101 aataaaaatggcaatatcaattcttatag-tttcttgtgtataaat 145  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||    
T  43119692 aataaaaatggcaatatcaattcttatagtttttttgtgtataaat 43119647  T

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Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 43119566 - 43119461
Alignment:
Q  1 gaaggagagttgaaagaagaggattcaggtctggtaggtgggcacgacgatcatcattcatcaatgttttattcacgagtgtagatcatctctattactt 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43119566 gaaggagagttgaaagaagaggatttaggtctggtaggtgggcacgaccatcatcattcatcaatgttttattcacgagtgtagatcatctctattactt 43119467  T
Q  101 aataaa 106  Q
    ||||||    
T  43119466 aataaa 43119461  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 43119366 - 43119322
Alignment:
Q  104 aaaaatggcaatatcaattcttatag-tttcttgtgtataaatat 147  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  43119366 aaaaatggcaatatcaattcttatagtttttttgtgtataaatat 43119322  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 49013049 - 49013085
Alignment:
Q  152 atttatatcatgtatttactacaaaactatagtaacg 188  Q
    ||||||||||||||||||||||| |||||||||||||    
T  49013049 atttatatcatgtatttactacataactatagtaacg 49013085  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 38177779 - 38177747
Alignment:
Q  198 atttattttaaaaaatggagagaatctcaactc 230  Q
    ||||||||||| |||||||||||||||||||||    
T  38177779 atttattttaataaatggagagaatctcaactc 38177747  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 25105711 - 25105797
Alignment:
Q  144 atatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 230  Q
    |||| |||||||||||  ||||||||||||||||||||||||| | ||||| |||||||||||| |||||||||| |||||||||||    
T  25105711 atatgtgcatttatatagtgtatttactacaaaactatagtaatggatgttaccatttattttagaaaatggagataatctcaactc 25105797  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 8019961 - 8020048
Alignment:
Q  142 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaact 229  Q
    |||||| ||||||||||||||||||||||  |||||||||||||| |||  ||||||||||||||| ||||| ||||| |||||||||    
T  8019961 aaatatgtgcatttatatcatgtatttacatcaaaactatagtaatgaacattgccatttattttagaaaattgagaggatctcaact 8020048  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 7593144 - 7593181
Alignment:
Q  149 tgcatttatatcatgtatttactacaaaactatagtaa 186  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  7593144 tgcatttatatcatatatttacttcaaaactatagtaa 7593181  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 8019528 - 8019585
Alignment:
Q  150 gcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttatttta 207  Q
    ||||||| |||||||||||||  |||||||||||||| |||  |||||||||| ||||    
T  8019528 gcatttacatcatgtatttacatcaaaactatagtaatgaacattgccatttaattta 8019585  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 21917434 - 21917346
Alignment:
Q  142 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 230  Q
    |||||| || ||||||||||||||||||||||||||||||||||| | |   ||| ||||||||||| |||||||||  ||||||||||    
T  21917434 aaatatgtgtatttatatcatgtatttactacaaaactatagtaatggaaactgcaatttattttaagaaatggagaatatctcaactc 21917346  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 18239246 - 18239315
Alignment:
Q  149 tgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagag 219  Q
    ||||||||||| |||||||||| |||||| |||||||| | || ||| |||||||| || |||||||||||    
T  18239246 tgcatttatataatgtatttac-acaaaaatatagtaatggatattgtcatttattgtagaaaatggagag 18239315  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 8442695 - 8442616
Alignment:
Q  151 catttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 230  Q
    ||||||||||||||||||||||||||| |||||||| |||  ||||||||||||  || |||| |||||||||| |||||    
T  8442695 catttatatcatgtatttactacaaaattatagtaatgaaaattgccatttattcaaagaaattgagagaatctgaactc 8442616  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 3960856 - 3960934
Alignment:
Q  149 tgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaa 227  Q
    |||||||||||||||||||||| ||||||||||||||| | |  ||  |||||||  || ||||||||||| |||||||    
T  3960856 tgcatttatatcatgtatttaccacaaaactatagtaatggacattatcatttatcgtagaaaatggagaggatctcaa 3960934  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 26674187 - 26674105
Alignment:
Q  142 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatct 224  Q
    |||||| || |||||||||||||||||||| |||||| ||||||| | |   |  |||||||||||  |||||||||||||||    
T  26674187 aaatatgtgtatttatatcatgtatttactccaaaacgatagtaatggacactatcatttattttaggaaatggagagaatct 26674105  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 186
Target Start/End: Original strand, 37940462 - 37940492
Alignment:
Q  156 atatcatgtatttactacaaaactatagtaa 186  Q
    |||||||||||||||||||||||||||||||    
T  37940462 atatcatgtatttactacaaaactatagtaa 37940492  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 22311755 - 22311667
Alignment:
Q  142 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 230  Q
    |||||| |||||||||||||| |||||||   ||||||||||||| | |  |||| ||||||| ||  ||||| |||| ||||||||||    
T  22311755 aaatatgtgcatttatatcatttatttacacgaaaactatagtaatggacattgcaatttattgtagcaaatgaagaggatctcaactc 22311667  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 36168716 - 36168676
Alignment:
Q  142 aaatatatgcatttatatcatgtatttactacaaaactata 182  Q
    ||||||||||||||||||||| |||||| | ||||||||||    
T  36168716 aaatatatgcatttatatcatttatttattccaaaactata 36168676  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 18391942 - 18392010
Alignment:
Q  161 atgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaact 229  Q
    |||||||||||||||||||||||||| |  | |||||||||||| ||  ||||||||||||||||||||    
T  18391942 atgtatttactacaaaactatagtaatgggttttgccatttattataggaaatggagagaatctcaact 18392010  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 54697932 - 54697995
Alignment:
Q  155 tatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggaga 218  Q
    |||||||| ||||||||||||||||||||||||| || || | |||||| ||||||||| ||||    
T  54697932 tatatcatatatttactacaaaactatagtaacggatatttcaatttatcttaaaaaatagaga 54697995  T

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Target: scaffold0236 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 16986 - 16928
Alignment:
Q  149 tgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttatttta 207  Q
    ||||||||||| ||| ||||||||||||||||||  || |||  |||||||||||||||    
T  16986 tgcatttatatgatgcatttactacaaaactatacaaatgaacattgccatttatttta 16928  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 180
Target Start/End: Complemental strand, 15069776 - 15069748
Alignment:
Q  152 atttatatcatgtatttactacaaaacta 180  Q
    |||||||||||||||||||||||||||||    
T  15069776 atttatatcatgtatttactacaaaacta 15069748  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 23998948 - 23998908
Alignment:
Q  142 aaatatatgcatttatatcatgtatttactacaaaactata 182  Q
    |||||| ||||||||||| ||||||||||||||||| ||||    
T  23998948 aaatatgtgcatttatattatgtatttactacaaaattata 23998908  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 27580744 - 27580832
Alignment:
Q  142 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 230  Q
    |||||| || |||||||| ||||||||| ||||||| ||||||||   |  ||| ||||||||||| |||||  |||| ||||||||||    
T  27580744 aaatatgtgtatttatattatgtatttattacaaaattatagtaatagacattgtcatttattttagaaaataaagaggatctcaactc 27580832  T

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