View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12999_high_19 (Length: 249)
Name: NF12999_high_19
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12999_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 36780648 - 36780884
Alignment:
| Q |
5 |
attttggatgtgtaaatttgttttcctaaaaacaatcttgtgtaatattgtttcatgaaccaaatcaattgaatcagaattgaaattaaatttgttaact |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
36780648 |
attttggatgtgtaaatttgttttcctaaaaacaatcttgtgtaatattgtttcatgaaccaaatcaattgaaccagagttgaaattaaattcgttaact |
36780747 |
T |
|
| Q |
105 |
caatgagttgagtttaaactatatagctcacattgttttgttcatgaatcgactcgattagatttacatgtacacaagtgtgtgtttaaaaatagaagat |
204 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36780748 |
caataagttgaatttaaactatatagctcacattgttttgttcatgaatcgactcgattatatttacatgtacataagtgtgtgtttaaaaatagaagat |
36780847 |
T |
|
| Q |
205 |
gttttaaggatagtctaaattgaaattgtagaattat |
241 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36780848 |
gttttaaagatagtctaaattgaaattgtagaattat |
36780884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University