View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12999_high_21 (Length: 244)
Name: NF12999_high_21
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12999_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 37097510 - 37097717
Alignment:
| Q |
22 |
taaggccatttgtaatgcctgctccaccaatcaagtagttgttgtcgagcttcctttggtaactttccattctttttcttcttcaaaaactctttcttaa |
121 |
Q |
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| T |
37097510 |
taaggccatttgtaatgcctgctccaccaatcaagtagttgttgtcgagcttcctttggtaactttccattctttttcttcttcaaaaactctttcttaa |
37097609 |
T |
|
| Q |
122 |
ggcttcctagatatccactatacttgcgtaaaagctgcacttttaattcctgatcttcaccttgagttgtatctaggttgttttcatgcacatcgatctc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37097610 |
ggcttcctagatatccactatacttgcgtaaaagctgcacttttaattcctgatcttcaccttgagttgtatctaggttgttttcatgcacatcgatctc |
37097709 |
T |
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| Q |
222 |
attctgtg |
229 |
Q |
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|||||||| |
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| T |
37097710 |
attctgtg |
37097717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 8792807 - 8792925
Alignment:
| Q |
22 |
taaggccatttgtaatgcctgctccaccaatcaagtagttgttgtcgagcttcctttggtaactttccattctttttcttcttcaaaaactctttcttaa |
121 |
Q |
| |
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||||||||||||||||| ||||||||||| ||||| | |||||| | ||||| ||||| | |||||| || || | ||||||| |||||||| ||| | |
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| T |
8792807 |
taaggccatttgtaatgtctgctccaccattcaagcaattgttgccttgcttcttttggaagctttccttttttccttttcttcataaactcttgcttca |
8792906 |
T |
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| Q |
122 |
ggcttcctagatatccact |
140 |
Q |
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| || |||| |||||||| |
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| T |
8792907 |
gactgcctaagtatccact |
8792925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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