View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12999_high_22 (Length: 239)
Name: NF12999_high_22
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12999_high_22 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 36780337 - 36780564
Alignment:
| Q |
17 |
aaatgtgatagaaaaactattttaaaattgatagtttgtcgttgttgattacgagttaatgtaggatcattgtatacagtgatcctgatgtaactaatat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36780337 |
aaatgtgatagaaaaactattttaaaattgatagtttgtcgttgttgattacgagttaatgtaggatcattgtatatagtgatcctgatgtaactaatat |
36780436 |
T |
|
| Q |
117 |
aacaaccaacgactaatcagaaacaactaacttctaatataacttaaacaataatctctct-----cactaattctttccacgggcttgactccatcctt |
211 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
36780437 |
aacaaccaacaactaatcagaaacagctaacttctaatataacttagacaataatctcactttatccactaattctttccacgggcttgactccatcctt |
36780536 |
T |
|
| Q |
212 |
cctccatccttcacatgcctaccttcct |
239 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
36780537 |
cctccatccttcacatgcctgccttcct |
36780564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University