View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12999_high_23 (Length: 206)
Name: NF12999_high_23
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12999_high_23 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 111218 - 111400
Alignment:
| Q |
17 |
tttatgtggtgatgatgcttataattccttcggtgatgcaagtgttcttgtaaaatctgggagattataaggagcggctgtttggtgaatattattgttg |
116 |
Q |
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| T |
111218 |
tttatgtggtgatgatgcttataattccttcggtgatgcaagtgtttttgtaaaatctgggagattataaggagcggctgtttggtgaatattattgttg |
111317 |
T |
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| Q |
117 |
ccacgagaaataatgttgatatatcatcaactgggatactatttgtaaacatctatagtaaaggtgtataagcttgctctgtg |
199 |
Q |
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| T |
111318 |
ccacgagaaataatgttgatatatcatcaactgggatactatttataaacatatatcgtaaaggtgtataagcttgctttgtg |
111400 |
T |
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Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 20646648 - 20646506
Alignment:
| Q |
17 |
tttatgtggtgatgatgcttataattccttcggtgatgcaagtgttcttgtaaaatctgggagattataaggagcggctgtttggtgaatattattgttg |
116 |
Q |
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| T |
20646648 |
tttatgtggtgatgatgcttataattccttcggtgatgcaagtgtttttgtaaaatctgggagattataaggagcggctgtttggtgaatattattgttg |
20646549 |
T |
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| Q |
117 |
ccacgagaaataatg-ttgatatatcatcaactgggatactat |
158 |
Q |
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| T |
20646548 |
ccacgagaaataatgtttgatatatcatcaactgggatactat |
20646506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 1503 - 1590
Alignment:
| Q |
24 |
ggtgatgatgcttataattccttcggtgatgcaagtgttcttgtaaaatctgggagattataaggagcggctgtttggtgaatattat |
111 |
Q |
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| T |
1503 |
ggtgatgatgattatctttcctttgctgctgagagtgtttttgtaaaatctggaagattataaggagctgctatgtggtgaatattat |
1590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 51168625 - 51168688
Alignment:
| Q |
133 |
tgatatatcatcaactgggatactatttgtaaacatctatagtaaaggtgtataagcttgctct |
196 |
Q |
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| T |
51168625 |
tgatatatcatcaattatgatactatttgtgaccatttatagtaaagttgtataaggttgctct |
51168688 |
T |
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