View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12999_high_5 (Length: 456)
Name: NF12999_high_5
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12999_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 26 - 356
Target Start/End: Original strand, 3920025 - 3920354
Alignment:
| Q |
26 |
aaccacttacatccctacctgatccctgtttcatttccaattccttttaccgcagtagttacactaccatcatcatcaatggattgaattgaatttgatt |
125 |
Q |
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| T |
3920025 |
aaccagttacatccctaccggatccctgtttcatttccaattccttttaccgcagtagttacactaccatcatcatcaatggattgaattgaatttgatt |
3920124 |
T |
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| Q |
126 |
tcaattctttataaatcttgctacttaattcacaaatcattgaacaaatgannnnnnnnnccagtgatgattttgtactgtatacaggagtttgtgacaa |
225 |
Q |
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| T |
3920125 |
tcaattctttataaatcttgctacataattcacaaatcattgaacaaatgagttttttt-ccagtgatgattttgtactgtatacaggagtttgtgacaa |
3920223 |
T |
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| Q |
226 |
tgatgaattggtttgtgagagcggtggtgaaacggtgattagaggaagagggcgacaatgtgattaaagaaaatgggcgacaattgggtggagattgaag |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3920224 |
tgatgaattggtttgtgagagcggtggtgaaacggtgattagaggaagagggcgtcgatgtgattaaagaaaatgggcgacaattgggtggagattgaag |
3920323 |
T |
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| Q |
326 |
gtgacagcgattggtccttttatttgaattg |
356 |
Q |
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| T |
3920324 |
gtgacagcgattggtccttttatttgaattg |
3920354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 354 - 447
Target Start/End: Original strand, 3920398 - 3920491
Alignment:
| Q |
354 |
ttgcctttgatttgtctaattgtcttgttgaaattaattgttcaacaattcccttgtaatcaacatagggtattatagttgtaattgttcatct |
447 |
Q |
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| T |
3920398 |
ttgcctttgatttgtctaattgtcttgttgaaattaattgttcaacaattcccttgtaatcaacatagggtattatagttgtaattgttcatct |
3920491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 18512408 - 18512484
Alignment:
| Q |
93 |
catcatcatcaatggattgaattgaatttgatttcaattctttataaatcttgctacttaattcacaaatcattgaa |
169 |
Q |
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| T |
18512408 |
catcatcatcaatggattgaattaaattcgatttcgattcattatggatattgctgcataattcacaaatcattgaa |
18512484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 28694270 - 28694348
Alignment:
| Q |
93 |
catcatcatcaatggattgaattgaatttgatttcaattctttataaatcttgctacttaattcacaaatcattgaaca |
171 |
Q |
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| T |
28694270 |
catcatcatcaatggattgaattaaattcgatttcgatttgttatggatatcgctacataattcacaaatcattgaaca |
28694348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 12206909 - 12206992
Alignment:
| Q |
93 |
catcatcatcaatggattgaattgaatttgatttcaattctttataaatcttgctacttaattcacaaatcattgaacaaatga |
176 |
Q |
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| T |
12206909 |
catcatcatcaatggattgaattaaattcgatttcgatttgttatggatatcgctgcataattcacaaatcattgaacacatga |
12206992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 12451337 - 12451420
Alignment:
| Q |
93 |
catcatcatcaatggattgaattgaatttgatttcaattctttataaatcttgctacttaattcacaaatcattgaacaaatga |
176 |
Q |
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| T |
12451337 |
catcatcatcaatggattgaattaaattcgatttcgatttgttatggatatcgctgcataattcacaaatcattgaacacatga |
12451420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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