View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12999_high_6 (Length: 437)
Name: NF12999_high_6
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12999_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 5173935 - 5173509
Alignment:
| Q |
1 |
tcttacaacataacataggtcctaggtttcaatccagctctgagaatgcagcagcgttaaaactcttaatggagagttgtatcaccctcgtgactctatt |
100 |
Q |
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| T |
5173935 |
tcttacaacataacataggtcctaggtttcaatccagctctgagaatgcagcagcgttaaaactcttaatggagagttgtatcaccctcgtgactctatt |
5173836 |
T |
|
| Q |
101 |
taactcgagggattagtctatatagttgcacgtgaaggatatccgatttacaacgataaataattatgtgcataggcttttgacatgttgttacttgtca |
200 |
Q |
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| T |
5173835 |
taactcgagggattagtctatatagttgcacgtgaaggatatccgatttacaacgataaataattatgtgcataggcttttgacatgttgttacttgtca |
5173736 |
T |
|
| Q |
201 |
ttatcctatagctaaaaatgctgctttcaaatttaagtttataaatgatctacaattgaagttcaaaaggttcgtcatcc-aaatttagtgacacaattg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5173735 |
ttatcctatagctaaaaatgctgctttcaaatttaagtttataaatgatctacaattgaagttcaaaaggttcgtcatccaaaatttagtgacacaattg |
5173636 |
T |
|
| Q |
300 |
agacatcaaatctatttttatcattagaaatctaactcaataacccggaatttgcaaacatggtagcacaagcaactgataatggaatccgtagccgaaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173635 |
agacatcaaatctatttttatcattagaaatctaactcaataacccggaatttgcaaacatggtagcacaagcaactgataatggaatccgtagccgaaa |
5173536 |
T |
|
| Q |
400 |
gaaatcatcaagaggtcaccacaggtt |
426 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5173535 |
gaaatcatcaagaggtcaccacaggtt |
5173509 |
T |
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