View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12999_high_7 (Length: 415)

Name: NF12999_high_7
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12999_high_7
NF12999_high_7
[»] chr5 (41 HSPs)
chr5 (18-386)||(504011-504377)
chr5 (156-263)||(39030573-39030680)
chr5 (172-268)||(39030572-39030668)
chr5 (172-268)||(2424447-2424543)
chr5 (172-263)||(15119307-15119398)
chr5 (166-261)||(33669930-33670025)
chr5 (202-268)||(968321-968387)
chr5 (160-278)||(14646357-14646475)
chr5 (196-254)||(17234565-17234623)
chr5 (172-241)||(2884060-2884129)
chr5 (172-276)||(15119306-15119410)
chr5 (156-210)||(34252710-34252764)
chr5 (202-243)||(17858198-17858239)
chr5 (206-263)||(26835273-26835330)
chr5 (202-263)||(33498371-33498432)
chr5 (156-261)||(34252729-34252834)
chr5 (196-268)||(14646395-14646467)
chr5 (378-413)||(189748-189783)
chr5 (202-261)||(5727728-5727786)
chr5 (154-217)||(9956554-9956617)
chr5 (172-235)||(12619657-12619720)
chr5 (172-255)||(42324898-42324981)
chr5 (195-277)||(2884060-2884142)
chr5 (385-415)||(8675476-8675506)
chr5 (386-415)||(8920077-8920106)
chr5 (382-415)||(18511839-18511872)
chr5 (386-415)||(30640789-30640818)
chr5 (156-261)||(33669939-33670044)
chr5 (202-275)||(38958059-38958132)
chr5 (189-237)||(5828250-5828298)
chr5 (203-239)||(9530947-9530983)
chr5 (384-412)||(9977116-9977144)
chr5 (385-413)||(19481227-19481255)
chr5 (387-415)||(21922188-21922216)
chr5 (384-412)||(23126389-23126417)
chr5 (387-415)||(25871489-25871517)
chr5 (199-247)||(28023959-28024007)
chr5 (159-231)||(33498357-33498429)
chr5 (167-231)||(38958065-38958129)
chr5 (219-283)||(39014991-39015055)
chr5 (387-415)||(43441738-43441766)
[»] chr2 (45 HSPs)
chr2 (161-268)||(31469076-31469183)
chr2 (156-276)||(944768-944888)
chr2 (156-268)||(10459271-10459383)
chr2 (172-263)||(11386319-11386410)
chr2 (160-283)||(31469068-31469191)
chr2 (198-257)||(35693934-35693993)
chr2 (160-268)||(16180432-16180540)
chr2 (202-249)||(33615275-33615322)
chr2 (211-268)||(33829394-33829451)
chr2 (199-263)||(2884266-2884330)
chr2 (156-231)||(17437168-17437243)
chr2 (218-261)||(29291119-29291162)
chr2 (377-415)||(3012877-3012915)
chr2 (156-210)||(10459259-10459313)
chr2 (172-257)||(2884265-2884350)
chr2 (203-268)||(17437166-17437231)
chr2 (172-256)||(30517873-30517955)
chr2 (157-222)||(33829383-33829448)
chr2 (166-247)||(38935366-38935447)
chr2 (156-261)||(43042178-43042283)
chr2 (203-263)||(25089955-25090014)
chr2 (172-231)||(4224986-4225045)
chr2 (188-263)||(7932753-7932828)
chr2 (172-223)||(15660701-15660752)
chr2 (180-263)||(18007509-18007592)
chr2 (195-249)||(5388841-5388895)
chr2 (385-415)||(6646833-6646863)
chr2 (378-412)||(7648383-7648417)
chr2 (202-248)||(19924329-19924375)
chr2 (385-415)||(29711977-29712007)
chr2 (385-415)||(30977887-30977917)
chr2 (172-273)||(11386318-11386419)
chr2 (386-415)||(35589430-35589459)
chr2 (386-415)||(36802895-36802924)
chr2 (386-415)||(39449160-39449189)
chr2 (189-237)||(5883059-5883107)
chr2 (385-413)||(9634481-9634509)
chr2 (166-210)||(16180498-16180542)
chr2 (387-415)||(18723594-18723622)
chr2 (387-415)||(22620202-22620230)
chr2 (173-248)||(37804360-37804436)
chr2 (383-415)||(40937095-40937127)
chr2 (175-223)||(41099028-41099076)
chr2 (202-242)||(43398877-43398917)
chr2 (387-415)||(44712032-44712060)
[»] chr1 (29 HSPs)
chr1 (156-263)||(3739807-3739914)
chr1 (172-268)||(3739819-3739915)
chr1 (188-268)||(5056319-5056399)
chr1 (188-268)||(3694012-3694092)
chr1 (173-242)||(52861706-52861775)
chr1 (172-268)||(29855063-29855159)
chr1 (158-284)||(30693330-30693456)
chr1 (166-212)||(35310313-35310359)
chr1 (202-256)||(47543616-47543670)
chr1 (156-261)||(31784748-31784852)
chr1 (205-249)||(10498368-10498412)
chr1 (167-222)||(3694038-3694093)
chr1 (384-415)||(33358190-33358221)
chr1 (385-415)||(8200085-8200115)
chr1 (202-256)||(30693352-30693406)
chr1 (384-413)||(10890091-10890120)
chr1 (386-415)||(34040543-34040572)
chr1 (386-415)||(43893256-43893285)
chr1 (383-412)||(44632536-44632565)
chr1 (386-415)||(48220175-48220204)
chr1 (386-415)||(48624883-48624912)
chr1 (384-413)||(50781603-50781632)
chr1 (387-415)||(4470357-4470385)
chr1 (385-413)||(15705107-15705135)
chr1 (385-413)||(33125368-33125396)
chr1 (387-415)||(35136844-35136872)
chr1 (387-415)||(36577455-36577483)
chr1 (387-415)||(44789186-44789214)
chr1 (385-413)||(52362480-52362508)
[»] chr7 (26 HSPs)
chr7 (156-263)||(16866394-16866501)
chr7 (173-268)||(16866406-16866501)
chr7 (166-256)||(18731993-18732083)
chr7 (189-263)||(30794451-30794525)
chr7 (172-232)||(27147606-27147666)
chr7 (188-247)||(32652431-32652490)
chr7 (202-268)||(5026145-5026211)
chr7 (202-256)||(23971224-23971278)
chr7 (383-415)||(13729722-13729754)
chr7 (172-240)||(30794450-30794518)
chr7 (166-209)||(6803310-6803353)
chr7 (202-257)||(44816483-44816538)
chr7 (189-268)||(47967918-47967997)
chr7 (377-411)||(21559788-21559822)
chr7 (377-411)||(46773689-46773723)
chr7 (380-413)||(35293121-35293154)
chr7 (386-415)||(37899256-37899285)
chr7 (386-415)||(37899322-37899351)
chr7 (204-268)||(6803312-6803376)
chr7 (213-261)||(34515855-34515903)
chr7 (385-413)||(35586818-35586846)
chr7 (377-413)||(37352100-37352136)
chr7 (202-242)||(37698860-37698900)
chr7 (384-412)||(39137150-39137178)
chr7 (385-413)||(41893913-41893941)
chr7 (378-414)||(44184603-44184639)
[»] chr3 (22 HSPs)
chr3 (161-275)||(32221468-32221582)
chr3 (189-263)||(31280165-31280239)
chr3 (202-279)||(47783072-47783149)
chr3 (188-231)||(29637458-29637501)
chr3 (202-271)||(26439319-26439387)
chr3 (199-256)||(40955795-40955852)
chr3 (172-213)||(46829102-46829143)
chr3 (172-263)||(30806941-30807032)
chr3 (154-261)||(31280146-31280253)
chr3 (202-261)||(40905814-40905873)
chr3 (385-415)||(21196122-21196152)
chr3 (175-261)||(32221482-32221568)
chr3 (385-415)||(33976437-33976467)
chr3 (385-415)||(49761317-49761347)
chr3 (202-259)||(5307341-5307398)
chr3 (175-256)||(26104235-26104316)
chr3 (380-413)||(34057998-34058031)
chr3 (386-415)||(50207013-50207042)
chr3 (387-415)||(3347165-3347193)
chr3 (387-415)||(24483006-24483034)
chr3 (202-286)||(26914488-26914572)
chr3 (206-242)||(46733048-46733084)
[»] chr6 (26 HSPs)
chr6 (159-256)||(2282415-2282512)
chr6 (156-248)||(28004616-28004708)
chr6 (156-261)||(31323826-31323931)
chr6 (217-275)||(28596073-28596131)
chr6 (172-257)||(8211799-8211884)
chr6 (156-261)||(31323807-31323912)
chr6 (172-231)||(8437816-8437875)
chr6 (202-275)||(8437813-8437886)
chr6 (166-275)||(28004621-28004730)
chr6 (188-268)||(24547197-24547277)
chr6 (383-415)||(28748120-28748152)
chr6 (202-242)||(33822319-33822359)
chr6 (384-415)||(33421757-33421788)
chr6 (212-263)||(35003769-35003820)
chr6 (377-415)||(5028297-5028335)
chr6 (385-415)||(15318231-15318261)
chr6 (385-415)||(15368866-15368896)
chr6 (172-234)||(35003768-35003830)
chr6 (166-207)||(14446699-14446740)
chr6 (156-261)||(30531190-30531295)
chr6 (172-256)||(1986213-1986297)
chr6 (384-412)||(2777362-2777390)
chr6 (387-415)||(6531226-6531254)
chr6 (172-231)||(7549784-7549841)
chr6 (385-413)||(32459562-32459590)
chr6 (377-413)||(34383903-34383939)
[»] scaffold0034 (1 HSPs)
scaffold0034 (180-284)||(94935-95039)
[»] scaffold0072 (1 HSPs)
scaffold0072 (188-261)||(20387-20460)
[»] chr8 (23 HSPs)
chr8 (199-279)||(8777763-8777843)
chr8 (175-262)||(33557787-33557874)
chr8 (187-260)||(13209977-13210050)
chr8 (188-263)||(9548074-9548149)
chr8 (187-268)||(7974810-7974891)
chr8 (172-248)||(8637254-8637330)
chr8 (383-415)||(30439537-30439569)
chr8 (167-263)||(35901039-35901135)
chr8 (377-412)||(1871660-1871695)
chr8 (189-248)||(12788241-12788300)
chr8 (175-222)||(15114629-15114676)
chr8 (383-413)||(4658308-4658338)
chr8 (385-415)||(5277747-5277777)
chr8 (172-221)||(5799612-5799662)
chr8 (187-269)||(29110983-29111065)
chr8 (385-415)||(41541867-41541897)
chr8 (386-415)||(3946239-3946268)
chr8 (172-261)||(29110971-29111060)
chr8 (378-415)||(34718106-34718143)
chr8 (213-261)||(15114629-15114677)
chr8 (387-415)||(16872199-16872227)
chr8 (191-254)||(29797968-29798034)
chr8 (387-415)||(29991412-29991440)
[»] chr4 (30 HSPs)
chr4 (202-277)||(4423145-4423220)
chr4 (193-245)||(7270226-7270277)
chr4 (172-272)||(54235223-54235323)
chr4 (204-268)||(55827282-55827346)
chr4 (188-242)||(43095262-43095316)
chr4 (382-415)||(4915716-4915749)
chr4 (382-415)||(14010161-14010194)
chr4 (212-261)||(30848641-30848690)
chr4 (159-279)||(12276816-12276936)
chr4 (175-263)||(54235234-54235322)
chr4 (204-268)||(55762905-55762969)
chr4 (156-212)||(55762925-55762981)
chr4 (380-415)||(22819642-22819677)
chr4 (384-415)||(28657472-28657503)
chr4 (167-261)||(4423153-4423247)
chr4 (175-209)||(30848656-30848690)
chr4 (382-412)||(42959266-42959296)
chr4 (385-415)||(43769721-43769751)
chr4 (187-245)||(51531505-51531563)
chr4 (385-415)||(51573675-51573705)
chr4 (202-267)||(3249691-3249756)
chr4 (199-256)||(4479612-4479669)
chr4 (386-415)||(31657657-31657686)
chr4 (386-415)||(39345023-39345052)
chr4 (166-231)||(55827283-55827348)
chr4 (385-413)||(2999110-2999138)
chr4 (167-263)||(12276830-12276926)
chr4 (387-415)||(21617183-21617211)
chr4 (189-261)||(24980651-24980723)
chr4 (387-415)||(51887663-51887691)
[»] scaffold2113 (1 HSPs)
scaffold2113 (156-248)||(570-661)
[»] scaffold0009 (1 HSPs)
scaffold0009 (175-242)||(51233-51300)
[»] scaffold0100 (1 HSPs)
scaffold0100 (385-415)||(44784-44814)
[»] scaffold0067 (1 HSPs)
scaffold0067 (196-237)||(35976-36017)
[»] scaffold0141 (1 HSPs)
scaffold0141 (385-413)||(11932-11960)


Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 504377 - 504011
Alignment:
Q  18 ccggggaccccgctgccattgccgttggcgtacatgaccctgccatagtagttacaacacttcaatgat---acacacaccttcatctaatttagaccaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  504377 ccggggaccccgctgccattgccgttggcgtacatgaccctgccatagtagttacaacacttcaatgatgatacacacaccttcatctaatttagaccaa 504278  T
Q  115 atatatgtatctttttattcatataaaaaattgaaatcgtgctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatac 214  Q
    ||||||||||||||||  ||||||||||||||||||| ||||||||||||| ||||||   ||| |||||||||||||||||||||||||||||||||||    
T  504277 atatatgtatctttttgctcatataaaaaattgaaattgtgctccctccgatccaaga---aagtaaaagttggtcaacaaaaattaatgtatttgatac 504181  T
Q  215 aaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttgaaacggaaggaatatatatgttcaaaaacactgagaattcaattcc 314  Q
    ||||| ||||||||||||  |||||||| |||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||  |||||||||| |    
T  504180 aaattctgaaccaaatat--taatttttgttgaccgatttttgcttatattttaaaacggaaggagtatatatgttcaaaaacacttggaattcaatttc 504083  T
Q  315 cccaacccgccaattttattagggccaagcaatttttatcatcctaattgtactttaccacaattttattaa 386  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| || ||||||||||    
T  504082 cccaacccgccaattttattagggccaggcaatttttatcaacctaaatgtactttactaccattttattaa 504011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 263
Target Start/End: Complemental strand, 39030680 - 39030573
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttt 255  Q
    ||||||||  ||||| |||||||||||| || |||||||||| |||||||||||| |||||||||| ||||||||| ||||| |||| |||||| |||||    
T  39030680 ctccctccatcccaaaatataagcaaaaattagtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttt 39030581  T
Q  256 tgcttata 263  Q
    ||||||||    
T  39030580 tgcttata 39030573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 39030572 - 39030668
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    |||||||||||| ||||||||||||| |||||||||||| |  ||| |||| |||||||| ||||| |||| |||||  ||||||||||||| ||||    
T  39030572 atataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgcttatattttg 39030668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 2424447 - 2424543
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    |||||||||||| || || |||| ||  | |||||| || |||||||||||||||||||| ||||| |||||| |||| ||||||| ||||||||||    
T  2424447 atataagcaaaaatttgttaacataagctgatgtatatggtacaaattttgaaccaaatacattaacttttatcgaccaatttttgtttataatttg 2424543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 15119398 - 15119307
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttata 263  Q
    |||||| ||||| ||||| || | || ||||| ||||| |||||||||||||| |||||| ||||| ||||||||||  |||||||||||||    
T  15119398 atataaacaaaaattggttaatataagttaatatatttaatacaaattttgaatcaaatacattaagttttattgactaatttttgcttata 15119307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 261
Target Start/End: Original strand, 33669930 - 33670025
Alignment:
Q  166 cccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgctta 261  Q
    ||||| || ||||||||| | |||||||| || ||| ||||| || |||||||||| ||||||||| ||||| |||| |||||| |||||||||||    
T  33669930 cccaaaatgtaagcaaaaatgggtcaacataagttagtgtatctggtacaaattttaaaccaaatacattaactttttttgaccaatttttgctta 33670025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 968321 - 968387
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    ||||||||| |||||||||||||| |||||||||||||||| |||||  |||||| |||||| ||||    
T  968321 atgtatttggtacaaattttgaactaaatatattaatttttgttgactcatttttacttatattttg 968387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 278
Target Start/End: Complemental strand, 14646475 - 14646357
Alignment:
Q  160 ctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgct 259  Q
    ||||| ||||| |||||||| ||| ||| | || |||||||||||||| |||| |||| |||| || ||||| |||||||| |||||||  |||||| ||    
T  14646475 ctccgtcccaaaatataagcgaaaattgataaataaaaattaatgtatatgattcaaaatttgtactaaatacattaatttatattgacttatttttact 14646376  T
Q  260 tataatttgaaacggaagg 278  Q
    |||| |||  |||||||||    
T  14646375 tatattttagaacggaagg 14646357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 17234565 - 17234623
Alignment:
Q  196 aaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgattt 254  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||||||| ||| ||||    
T  17234565 aaattaatgtatttgctacaaattttaaacaaaatatattaatttttatttaccaattt 17234623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 2884129 - 2884060
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttt 241  Q
    ||||||| |||| |||||||| |||| ||||||||||| ||||||||||| || |||||| |||||||||    
T  2884129 atataagtaaaaattggtcaataaaatttaatgtatttaatacaaattttaaatcaaatacattaatttt 2884060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 15119306 - 15119410
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttgaaa 271  Q
    |||||||||||| || ||||| |||| |||||||||||||| |||| |||| |  ||||||||||| || |||| ||| ||||||| ||||| |||  ||    
T  15119306 atataagcaaaaattagtcaataaaacttaatgtatttgattcaaaatttgtattaaatatattaacttatattaaccaatttttgtttatattttagaa 15119405  T
Q  272 cggaa 276  Q
    |||||    
T  15119406 cggaa 15119410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 34252710 - 34252764
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttg 210  Q
    ||||||||| ||||| || ||||||||| ||||||||||||| ||||||||||||    
T  34252710 ctccctccgtcccaaaatgtaagcaaaaattggtcaacaaaagttaatgtatttg 34252764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 17858239 - 17858198
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaattttta 243  Q
    |||||| ||||||||||||||||||||||| |||||||||||    
T  17858239 atgtatctgatacaaattttgaaccaaatacattaattttta 17858198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 26835273 - 26835330
Alignment:
Q  206 atttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttata 263  Q
    |||||||||||||||| ||||||||||||||| |||| ||||||  |||||| |||||    
T  26835273 atttgatacaaatttttaaccaaatatattaacttttgttgaccactttttgtttata 26835330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 33498432 - 33498371
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttata 263  Q
    ||||||||  |||||||||||||||||||||||| |||||| ||| || | |||||||||||    
T  33498432 atgtattttgtacaaattttgaaccaaatatattgatttttgttggccaacttttgcttata 33498371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 34252834 - 34252729
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttt 255  Q
    ||||||||| ||||| || ||||||||| | ||| |||| || || ||| || ||  | ||||||||||||||||| ||||| |||| |||||| |||||    
T  34252834 ctccctccgtcccaaaatgtaagcaaaaatgggttaacataagttgatgaatgtggcataaattttgaaccaaatacattaacttttgttgaccaatttt 34252735  T
Q  256 tgctta 261  Q
    ||||||    
T  34252734 tgctta 34252729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 14646395 - 14646467
Alignment:
Q  196 aaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    ||||||||||||||  ||||||||||||| || ||| ||||||||||||| | | ||||| ||||||| ||||    
T  14646395 aaattaatgtatttagtacaaattttgaatcatatacattaatttttatttatcaattttcgcttatattttg 14646467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 378 - 413
Target Start/End: Complemental strand, 189783 - 189748
Alignment:
Q  378 ttttattaagagaaatgatatttgaacatccatttt 413  Q
    ||||||| ||||||||||||||||||||||||||||    
T  189783 ttttatttagagaaatgatatttgaacatccatttt 189748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 5727786 - 5727728
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgctta 261  Q
    |||||| || |||||||||| |||||| |||||||||||||||||||| |||||| ||||    
T  5727786 atgtatctggtacaaattttaaaccaa-tatattaatttttattgaccaatttttactta 5727728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 9956617 - 9956554
Alignment:
Q  154 tgctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaa 217  Q
    ||||||||||| ||||| || |||| |||| ||||| ||||||| |||||||||||||| ||||    
T  9956617 tgctccctccgtcccaaaatgtaagtaaaaattggttaacaaaagttaatgtatttgattcaaa 9956554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 12619720 - 12619657
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatatt 235  Q
    |||||||||||| | | |||||| || || |||||||||||| |||||||||| ||||||||||    
T  12619720 atataagcaaaaatggatcaacataagttgatgtatttgatataaattttgaatcaaatatatt 12619657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 42324981 - 42324898
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttt 255  Q
    ||||||| |||| ||||||||||||| |||||||||||| |  ||| |||  |||||||| || ||||| |||||||| |||||    
T  42324981 atataagtaaaaattggtcaacaaaagttaatgtatttgttttaaaatttataccaaatacatcaatttatattgaccaatttt 42324898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 277
Target Start/End: Original strand, 2884060 - 2884142
Alignment:
Q  195 aaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttgaaacggaag 277  Q
    ||||||||||||||||||  ||| |||| |  ||||| ||||| ||||||||||| |||||| |||||| ||| |||| ||||    
T  2884060 aaaattaatgtatttgatttaaaatttgtattaaatacattaaattttattgaccaatttttacttatattttaaaacagaag 2884142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Complemental strand, 8675506 - 8675476
Alignment:
Q  385 aagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||    
T  8675506 aagagaaatgatatttgaacatccattttgt 8675476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 415
Target Start/End: Original strand, 8920077 - 8920106
Alignment:
Q  386 agagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||    
T  8920077 agagaaatgatatttgaacatccattttgt 8920106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 382 - 415
Target Start/End: Complemental strand, 18511872 - 18511839
Alignment:
Q  382 attaagagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||| ||||||||    
T  18511872 attaagagaaatgatatttgaacattcattttgt 18511839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 415
Target Start/End: Original strand, 30640789 - 30640818
Alignment:
Q  386 agagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||    
T  30640789 agagaaatgatatttgaacatccattttgt 30640818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 33670044 - 33669939
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttt 255  Q
    |||| |||| ||||| || ||||||||| |||||||| |||| |||||||||||| |  ||| |||| |||| ||| | ||| || | |||||| |||||    
T  33670044 ctccatccgtcccaaaatgtaagcaaaaattggtcaaaaaaagttaatgtatttggtttaaaatttgtaccagatacactaacttatgttgacccatttt 33669945  T
Q  256 tgctta 261  Q
    ||||||    
T  33669944 tgctta 33669939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 38958132 - 38958059
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttgaaacgga 275  Q
    ||||||||| |||||| ||||||||||||| ||||| |||| || | | |||||| |||||| |||| ||||||    
T  38958132 atgtatttggtacaaaatttgaaccaaatacattaacttttgttaatcaatttttacttatattttggaacgga 38958059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 5828298 - 5828250
Alignment:
Q  189 tcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaa 237  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||| |||||    
T  5828298 tcaataaaaattaatgtatttgatacatattatgaaccagatacattaa 5828250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 9530983 - 9530947
Alignment:
Q  203 tgtatttgatacaaattttgaaccaaatatattaatt 239  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  9530983 tgtatttgatataaattttgaaccaaatacattaatt 9530947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 412
Target Start/End: Original strand, 9977116 - 9977144
Alignment:
Q  384 taagagaaatgatatttgaacatccattt 412  Q
    |||||||||||||||||||||||||||||    
T  9977116 taagagaaatgatatttgaacatccattt 9977144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Complemental strand, 19481255 - 19481227
Alignment:
Q  385 aagagaaatgatatttgaacatccatttt 413  Q
    |||||||||||||||||||||||||||||    
T  19481255 aagagaaatgatatttgaacatccatttt 19481227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Complemental strand, 21922216 - 21922188
Alignment:
Q  387 gagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||    
T  21922216 gagaaatgatatttgaacatccattttgt 21922188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 412
Target Start/End: Complemental strand, 23126417 - 23126389
Alignment:
Q  384 taagagaaatgatatttgaacatccattt 412  Q
    |||||||||||||||||||||||||||||    
T  23126417 taagagaaatgatatttgaacatccattt 23126389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Complemental strand, 25871517 - 25871489
Alignment:
Q  387 gagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||    
T  25871517 gagaaatgatatttgaacatccattttgt 25871489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 28023959 - 28024007
Alignment:
Q  199 ttaatgtatttgatacaaattttgaaccaaatatattaatttttattga 247  Q
    |||||||||||  ||||||||||||| |||||| ||||| |||||||||    
T  28023959 ttaatgtattttgtacaaattttgaatcaaatacattaacttttattga 28024007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 33498357 - 33498429
Alignment:
Q  159 cctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaata 231  Q
    |||||| || || ||||||||||||||||| |||||||||| ||| |||||| | |||| |||| || |||||    
T  33498357 cctccgtcctaaaatataagcaaaagttggccaacaaaaatcaatatatttggttcaaaatttgtacaaaata 33498429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 38958065 - 38958129
Alignment:
Q  167 ccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaata 231  Q
    |||| ||||||| |||| ||| | ||||||| |||||||||||| | ||||||||| ||||||||    
T  38958065 ccaaaatataagtaaaaattgattaacaaaagttaatgtatttggttcaaattttgtaccaaata 38958129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 39015055 - 39014991
Alignment:
Q  219 tttgaaccaaatatattaatttttattgaccgatttttgcttataatttgaaacggaaggaatat 283  Q
    |||||||||||||||||||||||  |||||  ||||||| ||| | ||| ||||||| |||||||    
T  39015055 tttgaaccaaatatattaattttagttgactaatttttgtttacattttaaaacggagggaatat 39014991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Original strand, 43441738 - 43441766
Alignment:
Q  387 gagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||    
T  43441738 gagaaatgatatttgaacatccattttgt 43441766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 45)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 161 - 268
Target Start/End: Complemental strand, 31469183 - 31469076
Alignment:
Q  161 tccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgctt 260  Q
    |||| ||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||| ||||| |||| |||||| ||||||||||    
T  31469183 tccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttgatacaaatttttaaccaaatacattaacttttgttgaccaatttttgctt 31469084  T
Q  261 ataatttg 268  Q
    ||| ||||    
T  31469083 atattttg 31469076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 944888 - 944768
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttt 255  Q
    ||||||||| | ||| || |||| |||| || ||||||| || || ||||||||| |||||||||||||| ||||| ||||| ||||||||| |||||||    
T  944888 ctccctccgtctcaaaatgtaagtaaaaattagtcaacataagttgatgtatttggtacaaattttgaactaaatacattaacttttattgatcgatttt 944789  T
Q  256 tgcttataatttgaaacggaa 276  Q
    |||||||| ||||||||||||    
T  944788 tgcttatattttgaaacggaa 944768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 156 - 268
Target Start/End: Complemental strand, 10459383 - 10459271
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttt 255  Q
    ||||||||| ||||| || ||||||||  |||||||||| || || ||| || ||||||||||||||||||||||| ||||| |||| |||||| |||||    
T  10459383 ctccctccgtcccaaaatgtaagcaaagattggtcaacataagttgatgcatctgatacaaattttgaaccaaatacattaacttttgttgaccaatttt 10459284  T
Q  256 tgcttataatttg 268  Q
    |||||||| ||||    
T  10459283 tgcttatattttg 10459271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 11386410 - 11386319
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttata 263  Q
    |||||||||||| ||| |||||| || || |||||||||||||||||||||||  |||||||||||||||| |||| | ||||||| |||||    
T  11386410 atataagcaaaatttgatcaacataagttgatgtatttgatacaaattttgaattaaatatattaatttttgttgatcaatttttgtttata 11386319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 31469068 - 31469191
Alignment:
Q  160 ctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgct 259  Q
    ||||| ||||| |||||||||||| ||||||||||||| |||||||||||| |  ||| |||| | |||||| ||||| |||  |||||| |||||||||    
T  31469068 ctccgtcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaatttttgct 31469167  T
Q  260 tataatttgaaacggaaggaatat 283  Q
    |||| ||||  ||||| |||||||    
T  31469168 tatattttgggacggatggaatat 31469191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 35693993 - 35693934
Alignment:
Q  198 attaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttg 257  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||||||||||| |||||||    
T  35693993 attaatgtatttgatactaattttaaaccaaatacattaatttttattgaccaatttttg 35693934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 268
Target Start/End: Original strand, 16180432 - 16180540
Alignment:
Q  160 ctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgct 259  Q
    ||||| ||||| || ||||||||| || ||||||| ||||| |||||||  ||| ||||||||||||||||| ||||| |||| |||||| | |||| ||    
T  16180432 ctccgtcccaaaatgtaagcaaaaattagtcaacataaattgatgtattaaatataaattttgaaccaaatacattaacttttgttgaccaaattttact 16180531  T
Q  260 tataatttg 268  Q
    |||| ||||    
T  16180532 tatattttg 16180540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 249
Target Start/End: Complemental strand, 33615322 - 33615275
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgacc 249  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  33615322 atgtatttgatacaaattttgaatcaaatatattaatatttattgacc 33615275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 33829451 - 33829394
Alignment:
Q  211 atacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    |||||||||||| ||||||||||||||||||| |||||| ||||||| ||||| ||||    
T  33829451 atacaaattttgtaccaaatatattaatttttgttgaccaatttttgtttatattttg 33829394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 2884330 - 2884266
Alignment:
Q  199 ttaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttata 263  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||| |||||  |||||| ||||||    
T  2884330 ttaatatatttgatataaattttgaaccaaatacattaatttttgttgacaaatttttacttata 2884266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 17437243 - 17437168
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaata 231  Q
    ||||||||| ||||| |||||| ||||| || ||||||||||||||||||||||  | |||| |||| ||||||||    
T  17437243 ctccctccgtcccaaaatataaacaaaaatttgtcaacaaaaattaatgtatttagttcaaaatttgtaccaaata 17437168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 29291119 - 29291162
Alignment:
Q  218 ttttgaaccaaatatattaatttttattgaccgatttttgctta 261  Q
    |||||||||||||||||||| ||||||||||| |||||||||||    
T  29291119 ttttgaaccaaatatattaacttttattgaccaatttttgctta 29291162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 415
Target Start/End: Complemental strand, 3012915 - 3012877
Alignment:
Q  377 attttattaagagaaatgatatttgaacatccattttgt 415  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  3012915 atttttttaagagaaatgatatttgaacatccattttgt 3012877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 10459259 - 10459313
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttg 210  Q
    ||||||||  ||||| |||||||||||| ||||||||||||| ||||||||||||    
T  10459259 ctccctccttcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttg 10459313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 257
Target Start/End: Original strand, 2884265 - 2884350
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttg 257  Q
    ||||||| |||| || ||||||||||||||||||||||| | |||| |||  | |||||||||||| || |||||||  |||||||    
T  2884265 atataagtaaaaatttgtcaacaaaaattaatgtatttggttcaaaatttatatcaaatatattaaattatattgactcatttttg 2884350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 17437166 - 17437231
Alignment:
Q  203 tgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    |||||||| |||||||||||||| ||||| |||||||||| |||||  ||||||| ||||| ||||    
T  17437166 tgtatttggtacaaattttgaactaaatacattaatttttgttgacaaatttttgtttatattttg 17437231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 30517955 - 30517873
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgattttt 256  Q
    ||||||| |||| || ||||||||||||||||||||||||| ||||  |||||||||||  || || |||| || ||||||||||    
T  30517955 atataagtaaaaatttgtcaacaaaaattaatgtatttgatccaaa--ttgaaccaaatgcatcaacttttgtttaccgattttt 30517873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 33829383 - 33829448
Alignment:
Q  157 tccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttg 222  Q
    ||||| || ||||| |||||| ||||| ||||||||||||||||||| |||||| |||||| ||||    
T  33829383 tccctacgtcccaaaatataaacaaaaattggtcaacaaaaattaatatatttggtacaaaatttg 33829448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 38935366 - 38935447
Alignment:
Q  166 cccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattga 247  Q
    ||||| |||||||||||| |  ||||||| || || |||||||||||||| ||||||||| ||||| ||||| |||| ||||    
T  38935366 cccaaaatataagcaaaaatgagtcaacataagttgatgtatttgatacagattttgaacaaaatacattaacttttgttga 38935447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 43042283 - 43042178
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttt 255  Q
    ||||||||  ||||| || ||||||||| |  || ||||||| || |||||| ||||| |||||||||||| |||| ||||| |||| |||| |||||||    
T  43042283 ctccctccatcccaaaatgtaagcaaaaatgagtaaacaaaagttgatgtatctgatataaattttgaaccgaatacattaaattttgttgatcgatttt 43042184  T
Q  256 tgctta 261  Q
    | ||||    
T  43042183 tactta 43042178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 25089955 - 25090014
Alignment:
Q  203 tgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttata 263  Q
    |||||||||||||||||||||| ||||||||| || |||| || ||| |||||||||||||    
T  25089955 tgtatttgatacaaattttgaagcaaatatatgaagttttgtt-accaatttttgcttata 25090014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 4224986 - 4225045
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaata 231  Q
    ||||||| ||||||||||||||| ||||| |||||| || || |||||||||| ||||||    
T  4224986 atataagtaaaagttggtcaacataaattgatgtatctggtataaattttgaatcaaata 4225045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 7932828 - 7932753
Alignment:
Q  188 gtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttata 263  Q
    ||||||| || || |||||| ||||| |||||||||||||||||  |||| |||| |||||  |||||||||||||    
T  7932828 gtcaacataagttgatgtatctgatataaattttgaaccaaatacgttaacttttgttgactaatttttgcttata 7932753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 15660752 - 15660701
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttga 223  Q
    |||||||||||| ||| |||||| ||||||||||||||||| |||| |||||    
T  15660752 atataagcaaaaattgatcaacacaaattaatgtatttgattcaaaatttga 15660701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 18007592 - 18007509
Alignment:
Q  180 aaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttata 263  Q
    ||||||||||||| ||||||||| ||||||| | |||| |||| ||||||||||| || |||  |||| | ||||||| |||||    
T  18007592 aaaagttggtcaaaaaaaattaacgtatttggtccaaaatttgtaccaaatatatcaactttctttgatcaatttttgtttata 18007509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 5388895 - 5388841
Alignment:
Q  195 aaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgacc 249  Q
    |||||| ||||| ||||| ||||||||||| |||||| |||||||||| ||||||    
T  5388895 aaaatttatgtacttgatccaaattttgaatcaaatacattaatttttgttgacc 5388841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Original strand, 6646833 - 6646863
Alignment:
Q  385 aagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||    
T  6646833 aagagaaatgatatttgaacatccattttgt 6646863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 412
Target Start/End: Original strand, 7648383 - 7648417
Alignment:
Q  378 ttttattaagagaaatgatatttgaacatccattt 412  Q
    |||||| ||||||||||||||||||||||||||||    
T  7648383 ttttataaagagaaatgatatttgaacatccattt 7648417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 19924375 - 19924329
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgac 248  Q
    ||||||||| |||||||||||||||| ||| ||||| ||||||||||    
T  19924375 atgtatttggtacaaattttgaaccatatacattaacttttattgac 19924329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Original strand, 29711977 - 29712007
Alignment:
Q  385 aagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||    
T  29711977 aagagaaatgatatttgaacatccattttgt 29712007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Original strand, 30977887 - 30977917
Alignment:
Q  385 aagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||    
T  30977887 aagagaaatgatatttgaacatccattttgt 30977917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 11386318 - 11386419
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttgaaa 271  Q
    |||||| ||||| ||| ||||||||||||||| ||||| || |||| |||| | |||||| || || || | |||| | | ||||||||||| |||||||    
T  11386318 atataaacaaaaattgatcaacaaaaattaatatatttaattcaaaatttgtatcaaatacatcaacttatgttgatcaaattttgcttatattttgaaa 11386417  T
Q  272 cg 273  Q
    ||    
T  11386418 cg 11386419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 415
Target Start/End: Complemental strand, 35589459 - 35589430
Alignment:
Q  386 agagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||    
T  35589459 agagaaatgatatttgaacatccattttgt 35589430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 415
Target Start/End: Original strand, 36802895 - 36802924
Alignment:
Q  386 agagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||    
T  36802895 agagaaatgatatttgaacatccattttgt 36802924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 415
Target Start/End: Complemental strand, 39449189 - 39449160
Alignment:
Q  386 agagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||    
T  39449189 agagaaatgatatttgaacatccattttgt 39449160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 5883107 - 5883059
Alignment:
Q  189 tcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaa 237  Q
    ||||||||| || ||||||||||| || ||||||||||||||| |||||    
T  5883107 tcaacaaaatttgatgtatttgattcagattttgaaccaaatacattaa 5883059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Complemental strand, 9634509 - 9634481
Alignment:
Q  385 aagagaaatgatatttgaacatccatttt 413  Q
    |||||||||||||||||||||||||||||    
T  9634509 aagagaaatgatatttgaacatccatttt 9634481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 16180542 - 16180498
Alignment:
Q  166 cccaagatataagcaaaagttggtcaacaaaaattaatgtatttg 210  Q
    ||||| ||||||| |||| ||||||||||||| ||||||||||||    
T  16180542 cccaaaatataagtaaaatttggtcaacaaaagttaatgtatttg 16180498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Original strand, 18723594 - 18723622
Alignment:
Q  387 gagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||    
T  18723594 gagaaatgatatttgaacatccattttgt 18723622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Original strand, 22620202 - 22620230
Alignment:
Q  387 gagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||    
T  22620202 gagaaatgatatttgaacatccattttgt 22620230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 37804436 - 37804360
Alignment:
Q  173 tataagcaaaagttgg-tcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgac 248  Q
    |||||| |||| |||| ||||||||||||||||||| ||||  |||  ||||| || |||||||||||||| |||||    
T  37804436 tataagaaaaatttggatcaacaaaaattaatgtatctgattaaaaaattgaatcagatatattaatttttgttgac 37804360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 40937127 - 40937095
Alignment:
Q  383 ttaagagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||| |||||||||||||||||||    
T  40937127 ttaagagaaatgacatttgaacatccattttgt 40937095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 41099076 - 41099028
Alignment:
Q  175 taagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttga 223  Q
    ||||||||| | |||||||| || |||||||||||| ||||||||||||    
T  41099076 taagcaaaaatgggtcaacataagttaatgtatttggtacaaattttga 41099028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 43398877 - 43398917
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaattttt 242  Q
    ||||||||| |||||||||||||||||||| ||||| ||||    
T  43398877 atgtatttggtacaaattttgaaccaaatacattaactttt 43398917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Complemental strand, 44712060 - 44712032
Alignment:
Q  387 gagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||    
T  44712060 gagaaatgatatttgaacatccattttgt 44712032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 156 - 263
Target Start/End: Original strand, 3739807 - 3739914
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttt 255  Q
    ||||||||| ||||| |||||||||||| ||||||||| ||| |||||||||||| |||||||||| ||||||||| ||||| |||| |||||| |||||    
T  3739807 ctccctccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttt 3739906  T
Q  256 tgcttata 263  Q
    ||||||||    
T  3739907 tgcttata 3739914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 3739915 - 3739819
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    |||||||||||| ||||||||||||| |||||||||||| |  ||| |||| |||||||| ||||| |||  |||||| ||||||||||||| ||||    
T  3739915 atataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttg 3739819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 5056319 - 5056399
Alignment:
Q  188 gtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    ||||||| || || ||||||||||||||||||||||| ||||||  |||||||||||||||| ||||||| ||||| ||||    
T  5056319 gtcaacataagttgatgtatttgatacaaattttgaatcaaatacgttaatttttattgaccaatttttgtttatattttg 5056399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 3694012 - 3694092
Alignment:
Q  188 gtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    ||||||| ||||| |||||||| |||||||||||||| |||||| |||||||||| |||||| |||| | |||||| ||||    
T  3694012 gtcaacataaattgatgtatttaatacaaattttgaatcaaatacattaatttttgttgaccaatttctacttatattttg 3694092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 52861775 - 52861706
Alignment:
Q  173 tataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaattttt 242  Q
    |||||| |||||||| ||||  |||||| ||||||||||| ||||||||| || ||||||||||||||||    
T  52861775 tataagtaaaagttgatcaaataaaattgatgtatttgattcaaattttggactaaatatattaattttt 52861706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 29855159 - 29855063
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    |||||||||||| ||| ||||||||| |||||||||||  |||||||||| ||||||||| || || |||| ||||   ||||| ||||||| ||||    
T  29855159 atataagcaaaaattgatcaacaaaagttaatgtatttcgtacaaatttttaaccaaatacatcaacttttgttgattaattttcgcttatattttg 29855063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 284
Target Start/End: Original strand, 30693330 - 30693456
Alignment:
Q  158 ccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttg 257  Q
    ||||||| || || ||||||  |||| ||| |||||||||||||||||||||||| |||| |||| |||||||| || |  || | ||||   ||||||     
T  30693330 ccctccgtccgaaaatataaataaaaattgatcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacatcatattatgttgattcattttta 30693429  T
Q  258 cttataatttgaaacggaaggaatata 284  Q
    |||| | ||||||||||||||| ||||    
T  30693430 cttacattttgaaacggaaggagtata 30693456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 35310359 - 35310313
Alignment:
Q  166 cccaagatataagcaaaagttggtcaacaaaaattaatgtatttgat 212  Q
    ||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  35310359 cccaaaatataagtaaaaattggtcaacaaaaattaatgtatttgat 35310313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 47543670 - 47543616
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgaccgattttt 256  Q
    ||||||||| |||||||||||||||||||  |||||||||| |||||| ||||||    
T  47543670 atgtatttggtacaaattttgaaccaaattcattaatttttgttgaccaattttt 47543616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 31784852 - 31784748
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttt 255  Q
    ||||||| | ||||| || ||||||||| || ||||||| || || |||||| | ||||||||||||||| ||||| ||| |||| | || |||||||||    
T  31784852 ctccctctgtcccaaaatgtaagcaaaaatttgtcaacataagttgatgtatctaatacaaattttgaacaaaatacattcatttctgtt-accgatttt 31784754  T
Q  256 tgctta 261  Q
    ||||||    
T  31784753 tgctta 31784748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 10498368 - 10498412
Alignment:
Q  205 tatttgatacaaattttgaaccaaatatattaatttttattgacc 249  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||||    
T  10498368 tatttgatacaaattttaaactaaatatattaatttttgttgacc 10498412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 3694093 - 3694038
Alignment:
Q  167 ccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttg 222  Q
    |||| ||||||| | || |||||||||||||||||||||||||||| |||| ||||    
T  3694093 ccaaaatataagtagaaattggtcaacaaaaattaatgtatttgattcaaaatttg 3694038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 384 - 415
Target Start/End: Complemental strand, 33358221 - 33358190
Alignment:
Q  384 taagagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||||    
T  33358221 taagagaaatgatatttgaacatccattttgt 33358190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Original strand, 8200085 - 8200115
Alignment:
Q  385 aagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||    
T  8200085 aagagaaatgatatttgaacatccattttgt 8200115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 30693406 - 30693352
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgaccgattttt 256  Q
    ||||||||| ||||||||||||| |||||| |||||||||| |||| | ||||||    
T  30693406 atgtatttggtacaaattttgaatcaaatacattaatttttgttgatcaattttt 30693352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 384 - 413
Target Start/End: Complemental strand, 10890120 - 10890091
Alignment:
Q  384 taagagaaatgatatttgaacatccatttt 413  Q
    ||||||||||||||||||||||||||||||    
T  10890120 taagagaaatgatatttgaacatccatttt 10890091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 415
Target Start/End: Complemental strand, 34040572 - 34040543
Alignment:
Q  386 agagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||    
T  34040572 agagaaatgatatttgaacatccattttgt 34040543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 415
Target Start/End: Original strand, 43893256 - 43893285
Alignment:
Q  386 agagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||    
T  43893256 agagaaatgatatttgaacatccattttgt 43893285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 383 - 412
Target Start/End: Original strand, 44632536 - 44632565
Alignment:
Q  383 ttaagagaaatgatatttgaacatccattt 412  Q
    ||||||||||||||||||||||||||||||    
T  44632536 ttaagagaaatgatatttgaacatccattt 44632565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 415
Target Start/End: Complemental strand, 48220204 - 48220175
Alignment:
Q  386 agagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||    
T  48220204 agagaaatgatatttgaacatccattttgt 48220175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 415
Target Start/End: Original strand, 48624883 - 48624912
Alignment:
Q  386 agagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||    
T  48624883 agagaaatgatatttgaacatccattttgt 48624912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 384 - 413
Target Start/End: Complemental strand, 50781632 - 50781603
Alignment:
Q  384 taagagaaatgatatttgaacatccatttt 413  Q
    ||||||||||||||||||||||||||||||    
T  50781632 taagagaaatgatatttgaacatccatttt 50781603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Complemental strand, 4470385 - 4470357
Alignment:
Q  387 gagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||    
T  4470385 gagaaatgatatttgaacatccattttgt 4470357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Complemental strand, 15705135 - 15705107
Alignment:
Q  385 aagagaaatgatatttgaacatccatttt 413  Q
    |||||||||||||||||||||||||||||    
T  15705135 aagagaaatgatatttgaacatccatttt 15705107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Complemental strand, 33125396 - 33125368
Alignment:
Q  385 aagagaaatgatatttgaacatccatttt 413  Q
    |||||||||||||||||||||||||||||    
T  33125396 aagagaaatgatatttgaacatccatttt 33125368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Original strand, 35136844 - 35136872
Alignment:
Q  387 gagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||    
T  35136844 gagaaatgatatttgaacatccattttgt 35136872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Complemental strand, 36577483 - 36577455
Alignment:
Q  387 gagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||    
T  36577483 gagaaatgatatttgaacatccattttgt 36577455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Complemental strand, 44789214 - 44789186
Alignment:
Q  387 gagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||    
T  44789214 gagaaatgatatttgaacatccattttgt 44789186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Original strand, 52362480 - 52362508
Alignment:
Q  385 aagagaaatgatatttgaacatccatttt 413  Q
    |||||||||||||||||||||||||||||    
T  52362480 aagagaaatgatatttgaacatccatttt 52362508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 263
Target Start/End: Original strand, 16866394 - 16866501
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttt 255  Q
    ||||||||  ||||| |||||||||||| ||| |||| |||| |||||||||| | |||||||||| ||||||||| ||||| |||| |||||| |||||    
T  16866394 ctccctccatcccaaaatataagcaaaaattgatcaataaaagttaatgtattaggtacaaatttttaaccaaatacattaacttttgttgaccaatttt 16866493  T
Q  256 tgcttata 263  Q
    ||||||||    
T  16866494 tgcttata 16866501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 16866501 - 16866406
Alignment:
Q  173 tataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    ||||||||||| ||||||||||||| |||||||||||| |  ||| |||| ||| |||| ||||| ||||||||| | ||||||||||||| ||||    
T  16866501 tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgcttatattttg 16866406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 18731993 - 18732083
Alignment:
Q  166 cccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgattttt 256  Q
    ||||| |||||||||||| | | |||||| ||||| |||||| || || ||||||||||||||||| ||||| ||||||||||| ||||||    
T  18731993 cccaaaatataagcaaaaatggatcaacataaattgatgtatctggtataaattttgaaccaaatacattaacttttattgaccaattttt 18732083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 30794525 - 30794451
Alignment:
Q  189 tcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttata 263  Q
    |||||| |||| |||||||||| ||||||||||||| |||||||||||| |||| |||||| | |||| ||||||    
T  30794525 tcaacataaatgaatgtatttggtacaaattttgaatcaaatatattaaattttgttgaccaaattttacttata 30794451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 27147606 - 27147666
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatat 232  Q
    ||||||| |||| || |||||||||| ||||||||||||||||||||||| ||| ||||||    
T  27147606 atataagtaaaaattagtcaacaaaagttaatgtatttgatacaaattttaaactaaatat 27147666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 32652431 - 32652490
Alignment:
Q  188 gtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattga 247  Q
    ||||||| |||||  |||||||| |||||| ||||||||||||| |||||||||||||||    
T  32652431 gtcaacataaattggtgtatttggtacaaactttgaaccaaatacattaatttttattga 32652490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 5026211 - 5026145
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    ||||||||| ||||||||||| || ||||||||||| |||| || ||| ||||||||||||| ||||    
T  5026211 atgtatttggtacaaattttggactaaatatattaacttttgttaaccaatttttgcttatattttg 5026145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 23971224 - 23971278
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgaccgattttt 256  Q
    ||||||||| |||||||||||||| ||||||||| |||||| |||||| ||||||    
T  23971224 atgtatttggtacaaattttgaactaaatatatttatttttgttgaccaattttt 23971278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 13729722 - 13729754
Alignment:
Q  383 ttaagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||||    
T  13729722 ttaagagaaatgatatttgaacatccattttgt 13729754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 30794450 - 30794518
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaattt 240  Q
    ||||||| |||| ||||||||||||| ||||| |||||||| |||| |||| |||||||| ||| ||||    
T  30794450 atataagtaaaatttggtcaacaaaatttaatatatttgattcaaaatttgtaccaaatacattcattt 30794518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 6803310 - 6803353
Alignment:
Q  166 cccaagatataagcaaaagttggtcaacaaaaattaatgtattt 209  Q
    ||||| |||||||||||| ||||||||||||| |||||||||||    
T  6803310 cccaaaatataagcaaaatttggtcaacaaaagttaatgtattt 6803353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 44816538 - 44816483
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttg 257  Q
    ||||||||| |||||||||||||||||||| ||||| |||| ||| || |||||||    
T  44816538 atgtatttggtacaaattttgaaccaaatacattaacttttgttggccaatttttg 44816483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 47967997 - 47967918
Alignment:
Q  189 tcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    |||||| || |||||||||||  |||||||||| ||| ||||| || ||||||| |||||||| ||||| ||||| ||||    
T  47967997 tcaacataagttaatgtatttagtacaaattttaaactaaatacataaatttttgttgaccgaattttgtttatattttg 47967918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 411
Target Start/End: Original strand, 21559788 - 21559822
Alignment:
Q  377 attttattaagagaaatgatatttgaacatccatt 411  Q
    |||||| ||||||||||||||||||||||||||||    
T  21559788 attttaataagagaaatgatatttgaacatccatt 21559822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 411
Target Start/End: Complemental strand, 46773723 - 46773689
Alignment:
Q  377 attttattaagagaaatgatatttgaacatccatt 411  Q
    ||||| |||||||||||||||||||||||||||||    
T  46773723 attttgttaagagaaatgatatttgaacatccatt 46773689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 380 - 413
Target Start/End: Original strand, 35293121 - 35293154
Alignment:
Q  380 ttattaagagaaatgatatttgaacatccatttt 413  Q
    ||||| ||||||||||||||||||||||||||||    
T  35293121 ttatttagagaaatgatatttgaacatccatttt 35293154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 415
Target Start/End: Complemental strand, 37899285 - 37899256
Alignment:
Q  386 agagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||    
T  37899285 agagaaatgatatttgaacatccattttgt 37899256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 415
Target Start/End: Original strand, 37899322 - 37899351
Alignment:
Q  386 agagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||    
T  37899322 agagaaatgatatttgaacatccattttgt 37899351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 6803376 - 6803312
Alignment:
Q  204 gtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    ||||||| |||||||||| ||| ||||| ||||| |||| |||||| | ||||||||||| ||||    
T  6803376 gtatttggtacaaattttaaactaaatacattaacttttgttgaccaaattttgcttatattttg 6803312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 34515855 - 34515903
Alignment:
Q  213 acaaattttgaaccaaatatattaatttttattgaccgatttttgctta 261  Q
    ||||||||||||| ||||| ||||| ||||||||||| | |||||||||    
T  34515855 acaaattttgaacaaaatacattaacttttattgaccaaattttgctta 34515903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Complemental strand, 35586846 - 35586818
Alignment:
Q  385 aagagaaatgatatttgaacatccatttt 413  Q
    |||||||||||||||||||||||||||||    
T  35586846 aagagaaatgatatttgaacatccatttt 35586818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 413
Target Start/End: Original strand, 37352100 - 37352136
Alignment:
Q  377 attttattaagagaaatgatatttgaacatccatttt 413  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  37352100 atttttttaagagaaatgatatttgaacaaccatttt 37352136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 37698860 - 37698900
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaattttt 242  Q
    ||||||||||||||||||||| | ||||||||| |||||||    
T  37698860 atgtatttgatacaaattttgcatcaaatatatcaattttt 37698900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 412
Target Start/End: Original strand, 39137150 - 39137178
Alignment:
Q  384 taagagaaatgatatttgaacatccattt 412  Q
    |||||||||||||||||||||||||||||    
T  39137150 taagagaaatgatatttgaacatccattt 39137178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Original strand, 41893913 - 41893941
Alignment:
Q  385 aagagaaatgatatttgaacatccatttt 413  Q
    |||||||||||||||||||||||||||||    
T  41893913 aagagaaatgatatttgaacatccatttt 41893941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 44184639 - 44184603
Alignment:
Q  378 ttttattaagagaaatgatatttgaacatccattttg 414  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  44184639 ttttataaagagaaatgatatttgaacatctattttg 44184603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 275
Target Start/End: Original strand, 32221468 - 32221582
Alignment:
Q  161 tccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgctt 260  Q
    |||| ||||| || ||||||||| ||| ||| || ||||| ||||||||| |||||||||||||||||||| ||||| |||| |||||  ||||||||||    
T  32221468 tccgtcccaaaatgtaagcaaaaattgatcagcataaattgatgtatttggtacaaattttgaaccaaatacattaacttttgttgactaatttttgctt 32221567  T
Q  261 ataatttgaaacgga 275  Q
    | | ||||| |||||    
T  32221568 acattttgatacgga 32221582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 31280239 - 31280165
Alignment:
Q  189 tcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttata 263  Q
    |||||| |||||||||||| || |||||||||||||||||||| ||||| |||| |||| | |||||| ||||||    
T  31280239 tcaacataaattaatgtatatggtacaaattttgaaccaaatacattaaattttgttgatcaatttttacttata 31280165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 47783149 - 47783072
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttgaaacggaagga 279  Q
    |||||| ||||||||||||||||||||||| ||||| |||| |||||| |||||| |||| | |||| || |||||||    
T  47783149 atgtatctgatacaaattttgaaccaaatacattaactttttttgaccaatttttacttacattttggaatggaagga 47783072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 29637458 - 29637501
Alignment:
Q  188 gtcaacaaaaattaatgtatttgatacaaattttgaaccaaata 231  Q
    ||||||| |||||||| |||||||||||||||||||||||||||    
T  29637458 gtcaacataaattaatatatttgatacaaattttgaaccaaata 29637501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 26439387 - 26439319
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttgaaa 271  Q
    ||||||||||||||||||||||| |||||| |||||||||| ||| |  || |||||||||| |||||||    
T  26439387 atgtatttgatacaaattttgaatcaaatacattaattttt-ttggctaatatttgcttatattttgaaa 26439319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 40955852 - 40955795
Alignment:
Q  199 ttaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgattttt 256  Q
    ||||||||| ||||||||||||||||| ||||| | ||||||||||||| | ||||||    
T  40955852 ttaatgtatatgatacaaattttgaactaaatacaataatttttattgatcaattttt 40955795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 46829143 - 46829102
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgata 213  Q
    |||||||||||| ||||||||||||| |||||||||||||||    
T  46829143 atataagcaaaaattggtcaacaaaagttaatgtatttgata 46829102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 30807032 - 30806941
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttata 263  Q
    |||||||||||| | |||||||| || ||  ||| |  ||||||||||||| ||||| || ||||||||||||||| | |||||| ||||||    
T  30807032 atataagcaaaaatgggtcaacataagttggtgtgtgcgatacaaattttggaccaagtacattaatttttattgatcaattttttcttata 30806941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 31280146 - 31280253
Alignment:
Q  154 tgctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatt 253  Q
    ||||||||| || | || ||||||| |||| ||| ||||||||| |||||||||||| | |||| |||| |||| ||| |||||||| | |||| | |||    
T  31280146 tgctccctctgatctaaaatataagtaaaaattgatcaacaaaatttaatgtatttggttcaaaatttgtaccatatacattaatttatgttgatccatt 31280245  T
Q  254 tttgctta 261  Q
    ||| ||||    
T  31280246 tttcctta 31280253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 40905873 - 40905814
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgctta 261  Q
    |||||| || || ||||||||||||||||| ||||| |||| |||||| |||||||||||    
T  40905873 atgtatctggtataaattttgaaccaaataaattaacttttgttgaccaatttttgctta 40905814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Original strand, 21196122 - 21196152
Alignment:
Q  385 aagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||    
T  21196122 aagagaaatgatatttgaacatccattttgt 21196152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 32221568 - 32221482
Alignment:
Q  175 taagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgctta 261  Q
    ||||||||| || |||||||||| |||||||||||| | |||| |||| |||||||| || ||||| |  ||| | |||||||||||    
T  32221568 taagcaaaaattagtcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttgctta 32221482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Complemental strand, 33976467 - 33976437
Alignment:
Q  385 aagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||    
T  33976467 aagagaaatgatatttgaacatccattttgt 33976437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Original strand, 49761317 - 49761347
Alignment:
Q  385 aagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||    
T  49761317 aagagaaatgatatttgaacatccattttgt 49761347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 5307398 - 5307341
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgct 259  Q
    |||||| | ||||||||||| ||| ||||  ||||||||||||||||| |||||||||    
T  5307398 atgtatctaatacaaattttaaacgaaatccattaatttttattgaccaatttttgct 5307341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 26104316 - 26104235
Alignment:
Q  175 taagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgattttt 256  Q
    ||||||||| |  ||||||| ||||| || | ||||||||||||||||||| ||||| |||| ||||| || ||| ||||||    
T  26104316 taagcaaaaatgagtcaacataaattgatttgtttgatacaaattttgaactaaatacattagtttttgttaaccaattttt 26104235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 380 - 413
Target Start/End: Complemental strand, 34058031 - 34057998
Alignment:
Q  380 ttattaagagaaatgatatttgaacatccatttt 413  Q
    |||||| |||||||||||||||||||||||||||    
T  34058031 ttattatgagaaatgatatttgaacatccatttt 34057998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 415
Target Start/End: Complemental strand, 50207042 - 50207013
Alignment:
Q  386 agagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||    
T  50207042 agagaaatgatatttgaacatccattttgt 50207013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Complemental strand, 3347193 - 3347165
Alignment:
Q  387 gagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||    
T  3347193 gagaaatgatatttgaacatccattttgt 3347165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Complemental strand, 24483034 - 24483006
Alignment:
Q  387 gagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||    
T  24483034 gagaaatgatatttgaacatccattttgt 24483006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 26914488 - 26914572
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttgaaacggaaggaatatata 286  Q
    ||||||||  || ||||||||||||| ||| |||||||||| |||| | ||||||||||| | |||| |||| | | ||||||||    
T  26914488 atgtatttagtataaattttgaaccacatacattaatttttgttgatcaatttttgcttacattttggaacgaaggaaatatata 26914572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 46733084 - 46733048
Alignment:
Q  206 atttgatacaaattttgaaccaaatatattaattttt 242  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  46733084 atttgatacaaattttgaatcaaatacattaattttt 46733048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 159 - 256
Target Start/End: Complemental strand, 2282512 - 2282415
Alignment:
Q  159 cctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgattttt 256  Q
    |||||| ||||| |||||||||||| || || |||| ||||| ||||||||||||||| |||||||| ||||| ||||| |||| |||||| ||||||    
T  2282512 cctccgtcccaatatataagcaaaaattagttaacataaattgatgtatttgatacaatttttgaactaaatacattaacttttgttgaccaattttt 2282415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 28004616 - 28004708
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgac 248  Q
    |||||||||  ||||  |||||||| || |||| ||||||||||||||||||||| |||||||||||| ||||||| ||||| |||| |||||    
T  28004616 ctccctccgttccaaagtataagcataatttggccaacaaaaattaatgtatttggtacaaattttgagccaaatacattaacttttgttgac 28004708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 31323931 - 31323826
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttt 255  Q
    ||||||| | ||||| || ||||||||| | |||||||| || || |||||| || |||||||||||||| ||||| ||||| |||| |||||| |||||    
T  31323931 ctccctctgtcccaaaatgtaagcaaaaataggtcaacataagttgatgtatctggtacaaattttgaacaaaatacattaacttttgttgaccaatttt 31323832  T
Q  256 tgctta 261  Q
    ||||||    
T  31323831 tgctta 31323826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 275
Target Start/End: Complemental strand, 28596131 - 28596073
Alignment:
Q  217 attttgaaccaaatatattaatttttattgaccgatttttgcttataatttgaaacgga 275  Q
    |||||||||||||||||||||||||| |||||| |||||| |||| | |||||||||||    
T  28596131 attttgaaccaaatatattaatttttgttgaccaatttttacttacattttgaaacgga 28596073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 257
Target Start/End: Complemental strand, 8211884 - 8211799
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttg 257  Q
    ||||||| |||| | | |||||| ||||||||||||||  ||||||||| | |||||||||||||| ||||||||| | |||||||    
T  8211884 atataagtaaaaatagatcaacataaattaatgtatttagtacaaatttcggaccaaatatattaaattttattgatcaatttttg 8211799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 261
Target Start/End: Original strand, 31323807 - 31323912
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttt 255  Q
    ||||||| ||||||| || ||||||||| ||||||||||||| |||||||||||  | |||| |||| |||| ||| || || || | |||||| |||||    
T  31323807 ctccctctgacccaaaatgtaagcaaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttt 31323906  T
Q  256 tgctta 261  Q
    ||||||    
T  31323907 tgctta 31323912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 8437875 - 8437816
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaata 231  Q
    ||||||| |||| || ||||||||||||||||||||||||| |||| |||| ||||||||    
T  8437875 atataagtaaaatttagtcaacaaaaattaatgtatttgattcaaaatttgtaccaaata 8437816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 8437813 - 8437886
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttgaaacgga 275  Q
    ||||||||| ||||||||||||| |||||| |||||||||| |||||  | |||| |||||| ||||| |||||    
T  8437813 atgtatttggtacaaattttgaatcaaatacattaatttttgttgactaaattttacttatattttgagacgga 8437886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 275
Target Start/End: Complemental strand, 28004730 - 28004621
Alignment:
Q  166 cccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataat 265  Q
    ||||| |||||||  ||| || |||||||||| ||||||||||||   |||| |||| |||||||| |||||||||| ||| || | || |||||||| |    
T  28004730 cccaaaatataagggaaaattagtcaacaaaagttaatgtatttggctcaaaatttgtaccaaatacattaatttttgttggccaaattatgcttatact 28004631  T
Q  266 ttgaaacgga 275  Q
    ||| ||||||    
T  28004630 ttggaacgga 28004621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 24547197 - 24547277
Alignment:
Q  188 gtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    ||||||| ||||| |||||||||||| ||||||| |||||| || |||| || || ||||||||||| || ||||| ||||    
T  24547197 gtcaacataaattgatgtatttgatataaattttaaaccaagtacattagttcttgttgaccgatttatggttatattttg 24547277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 28748120 - 28748152
Alignment:
Q  383 ttaagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||||    
T  28748120 ttaagagaaatgatatttgaacatccattttgt 28748152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 33822359 - 33822319
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaattttt 242  Q
    |||||||||||||||||||||||| ||||||||||| ||||    
T  33822359 atgtatttgatacaaattttgaactaaatatattaactttt 33822319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 384 - 415
Target Start/End: Original strand, 33421757 - 33421788
Alignment:
Q  384 taagagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||||    
T  33421757 taagagaaatgatatttgaacatccattttgt 33421788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 35003820 - 35003769
Alignment:
Q  212 tacaaattttgaaccaaatatattaatttttattgaccgatttttgcttata 263  Q
    ||||||||||||| |||||| ||||||||||||| ||| |||||| ||||||    
T  35003820 tacaaattttgaatcaaatacattaatttttattaaccaatttttacttata 35003769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 415
Target Start/End: Complemental strand, 5028335 - 5028297
Alignment:
Q  377 attttattaagagaaatgatatttgaacatccattttgt 415  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  5028335 attttaataagagaaatgatatttaaacatccattttgt 5028297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Complemental strand, 15318261 - 15318231
Alignment:
Q  385 aagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||    
T  15318261 aagagaaatgatatttgaacatccattttgt 15318231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Complemental strand, 15368896 - 15368866
Alignment:
Q  385 aagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||    
T  15368896 aagagaaatgatatttgaacatccattttgt 15368866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 35003768 - 35003830
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatat 234  Q
    ||||||| |||| ||||| || ||||||||||||||||||| |||| |||| || ||||||||    
T  35003768 atataagtaaaaattggttaataaaaattaatgtatttgattcaaaatttgtacaaaatatat 35003830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 14446699 - 14446740
Alignment:
Q  166 cccaagatataagcaaaagttggtcaacaaaaattaatgtat 207  Q
    ||||| || ||||||||||||||||||||||| |||||||||    
T  14446699 cccaaaatgtaagcaaaagttggtcaacaaaagttaatgtat 14446740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 30531295 - 30531190
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttt 255  Q
    ||||||||| ||||| || ||||||||| |   |||||| || || ||||||||| |||||| ||||||||||||| || || || | ||||||  ||||    
T  30531295 ctccctccgtcccaaaatgtaagcaaaaatgactcaacataagttgatgtatttggtacaaactttgaaccaaatacatcaacttatgttgacccgtttt 30531196  T
Q  256 tgctta 261  Q
    ||||||    
T  30531195 tgctta 30531190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 1986213 - 1986297
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgattttt 256  Q
    ||||||| ||||||||||||| ||||||||||| ||||  |  ||| |||  |||||||||||||| || | ||||| |||||||    
T  1986213 atataagtaaaagttggtcaataaaaattaatgcatttagtttaaaatttataccaaatatattaacttatgttgactgattttt 1986297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 412
Target Start/End: Complemental strand, 2777390 - 2777362
Alignment:
Q  384 taagagaaatgatatttgaacatccattt 412  Q
    |||||||||||||||||||||||||||||    
T  2777390 taagagaaatgatatttgaacatccattt 2777362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Complemental strand, 6531254 - 6531226
Alignment:
Q  387 gagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||    
T  6531254 gagaaatgatatttgaacatccattttgt 6531226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 7549784 - 7549841
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaata 231  Q
    |||||||||||| |||||  |||||| |||||||||||||| |||  |||||||||||||    
T  7549784 atataagcaaaaattggtgtacaaaagttaatgtatttgattcaa--tttgaaccaaata 7549841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Complemental strand, 32459590 - 32459562
Alignment:
Q  385 aagagaaatgatatttgaacatccatttt 413  Q
    |||||||||||||||||||||||||||||    
T  32459590 aagagaaatgatatttgaacatccatttt 32459562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 413
Target Start/End: Complemental strand, 34383939 - 34383903
Alignment:
Q  377 attttattaagagaaatgatatttgaacatccatttt 413  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  34383939 attttattatgagaaatgatatttgaacattcatttt 34383903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 284
Target Start/End: Complemental strand, 95039 - 94935
Alignment:
Q  180 aaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttgaaacggaagga 279  Q
    |||| |||||||||| || || ||||||||| ||||||||||||||  |||| ||||||||||||||| | ||||| ||||| | ||| |||||||||||    
T  95039 aaaaattggtcaacataagttgatgtatttggtacaaattttgaacataatacattaatttttattgatcaattttcgcttacatttttaaacggaagga 94940  T
Q  280 atata 284  Q
     ||||    
T  94939 gtata 94935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 20387 - 20460
Alignment:
Q  188 gtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgctta 261  Q
    ||||||| |||||||||||||| ||||||||||| ||||| |||  |||||||||| ||||| |||||||||||    
T  20387 gtcaacataaattaatgtatttaatacaaattttaaaccacatacgttaatttttactgaccaatttttgctta 20460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 279
Target Start/End: Complemental strand, 8777843 - 8777763
Alignment:
Q  199 ttaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttgaaacggaagga 279  Q
    ||||||||||| ||| ||||||||||||||||||||||| |||| |||| | ||||||| ||||| ||| | |||||||||    
T  8777843 ttaatgtatttaatataaattttgaaccaaatatattaacttttgttgatcaatttttgtttatattttaagacggaagga 8777763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 33557787 - 33557874
Alignment:
Q  175 taagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttat 262  Q
    |||||||||  || |||||| || || |||||||||||||||||||||||| ||||| ||||| ||||||||| | |||||| |||||    
T  33557787 taagcaaaaaatgatcaacataagtttatgtatttgatacaaattttgaactaaatacattaacttttattgatcaatttttacttat 33557874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 13210050 - 13209977
Alignment:
Q  187 ggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgctt 260  Q
    |||||||| || || |||||| ||||||||||||||||||||||| ||||| |||| |||| | ||||||||||    
T  13210050 ggtcaacataagttgatgtatctgatacaaattttgaaccaaatacattaacttttgttgatcaatttttgctt 13209977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 9548074 - 9548149
Alignment:
Q  188 gtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttata 263  Q
    ||||||| || || ||||||||  |||||||||||||||||||||| |||||||| |||| | ||||||| |||||    
T  9548074 gtcaacataagttgatgtatttagtacaaattttgaaccaaatataataatttttgttgaacaatttttgtttata 9548149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 268
Target Start/End: Original strand, 7974810 - 7974891
Alignment:
Q  187 ggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    |||||||| ||||| | ||||||| ||||||||||||   ||||| ||||| ||||||||||| ||||||| ||||| ||||    
T  7974810 ggtcaacataaattgacgtatttggtacaaattttgacaaaaatacattaacttttattgaccaatttttgtttatattttg 7974891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 8637330 - 8637254
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgac 248  Q
    |||||||||||| |  |||||  |||||| |||||||||   ||||||||||||||||||||| ||||||| |||||    
T  8637330 atataagcaaaattgagtcaaagaaaattgatgtatttggaccaaattttgaaccaaatatatcaattttttttgac 8637254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 30439569 - 30439537
Alignment:
Q  383 ttaagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||||    
T  30439569 ttaagagaaatgatatttgaacatccattttgt 30439537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 35901039 - 35901135
Alignment:
Q  167 ccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttata 263  Q
    |||| |||||||||||| |  ||||||| || || ||||| ||  |||||||||||| || |||| ||||| |||| |||||| |||||||||||||    
T  35901039 ccaaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgagcccaatacattaacttttgttgacctatttttgcttata 35901135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 377 - 412
Target Start/End: Complemental strand, 1871695 - 1871660
Alignment:
Q  377 attttattaagagaaatgatatttgaacatccattt 412  Q
    |||||||||||||||||||||||| |||||||||||    
T  1871695 attttattaagagaaatgatattttaacatccattt 1871660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 12788241 - 12788300
Alignment:
Q  189 tcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgac 248  Q
    |||||| ||||| ||||||||| || |||| | |||| ||||||||||||||||||||||    
T  12788241 tcaacataaattgatgtatttgttataaatatagaacaaaatatattaatttttattgac 12788300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 15114629 - 15114676
Alignment:
Q  175 taagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttg 222  Q
    |||| |||| |||||||||||||||||||||||||||| |||| ||||    
T  15114629 taagaaaaaattggtcaacaaaaattaatgtatttgattcaaaatttg 15114676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 413
Target Start/End: Complemental strand, 4658338 - 4658308
Alignment:
Q  383 ttaagagaaatgatatttgaacatccatttt 413  Q
    |||||||||||||||||||||||||||||||    
T  4658338 ttaagagaaatgatatttgaacatccatttt 4658308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Complemental strand, 5277777 - 5277747
Alignment:
Q  385 aagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||    
T  5277777 aagagaaatgatatttgaacatccattttgt 5277747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 5799662 - 5799612
Alignment:
Q  172 atataagcaaaagttg-gtcaacaaaaattaatgtatttgatacaaatttt 221  Q
    ||||||| |||||||| |||||||||||||||||||||||||  |||||||    
T  5799662 atataagaaaaagttgcgtcaacaaaaattaatgtatttgatttaaatttt 5799612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 269
Target Start/End: Original strand, 29110983 - 29111065
Alignment:
Q  187 ggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttga 269  Q
    |||||| | |||| |||||||||| || ||||||||||||||||| ||||| |||  |||| | ||||||| ||||| |||||    
T  29110983 ggtcaatataaatgaatgtatttggtataaattttgaaccaaatacattaagtttcgttgatcaatttttgtttatattttga 29111065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Original strand, 41541867 - 41541897
Alignment:
Q  385 aagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||    
T  41541867 aagagaaatgatatttgaacatccattttgt 41541897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 415
Target Start/End: Original strand, 3946239 - 3946268
Alignment:
Q  386 agagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||    
T  3946239 agagaaatgatatttgaacatccattttgt 3946268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 29111060 - 29110971
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgctta 261  Q
    |||||| ||||| ||| ||||| ||| |||||||||||| | |||| |||  |||||||| ||| |||| |||||||| ||| |||||||    
T  29111060 atataaacaaaaattgatcaacgaaacttaatgtatttggttcaaaatttataccaaatacattcatttatattgacctattattgctta 29110971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 415
Target Start/End: Original strand, 34718106 - 34718143
Alignment:
Q  378 ttttattaagagaaatgatatttgaacatccattttgt 415  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  34718106 tttttttatgagaaatgatatttgaacatccattttgt 34718143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 15114677 - 15114629
Alignment:
Q  213 acaaattttgaaccaaatatattaatttttattgaccgatttttgctta 261  Q
    |||||||||||| |||||| |||||||||| |||||| |||||| ||||    
T  15114677 acaaattttgaatcaaatacattaatttttgttgaccaattttttctta 15114629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Complemental strand, 16872227 - 16872199
Alignment:
Q  387 gagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||    
T  16872227 gagaaatgatatttgaacatccattttgt 16872199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 29797968 - 29798034
Alignment:
Q  191 aacaaaaattaatgtatttgatacaaattttgaac---caaatatattaatttttattgaccgattt 254  Q
    |||| ||||| ||||||||| ||||||||||||||   |||||| |||||||||| |||||| ||||    
T  29797968 aacataaatttatgtatttggtacaaattttgaaccaacaaatacattaatttttgttgaccaattt 29798034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Original strand, 29991412 - 29991440
Alignment:
Q  387 gagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||    
T  29991412 gagaaatgatatttgaacatccattttgt 29991440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 4423220 - 4423145
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttgaaacggaag 277  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||| | |||||  |||||| ||||  |||||||    
T  4423220 atgtatttggtacaaattttgaatcaaatatattaatttttattgatcaattttcacttatattttggtacggaag 4423145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 7270277 - 7270226
Alignment:
Q  193 caaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttatt 245  Q
    |||||||||||||||||||| |||||||||||||||||| | |||||||||||    
T  7270277 caaaaattaatgtatttgat-caaattttgaaccaaatacactaatttttatt 7270226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 272
Target Start/End: Complemental strand, 54235323 - 54235223
Alignment:
Q  172 atataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttgaaa 271  Q
    |||||| ||||| ||| ||||||||| |||||||||||| | |||| |||| || ||||| || ||||| |||||||  ||||||||||| | |||||||    
T  54235323 atataaacaaaaattgctcaacaaaagttaatgtatttggttcaaaatttgtactaaatacatcaatttatattgactcatttttgcttacattttgaaa 54235224  T
Q  272 c 272  Q
    |    
T  54235223 c 54235223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 55827282 - 55827346
Alignment:
Q  204 gtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    ||||||| |||||| ||| ||||||||||||||| |||| |||||| ||||||||||||| ||||    
T  55827282 gtatttgctacaaaattttaaccaaatatattaacttttgttgaccaatttttgcttatattttg 55827346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 43095316 - 43095262
Alignment:
Q  188 gtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaattttt 242  Q
    |||||||||||||||||||| || | |||||||||||||| ||| ||||||||||    
T  43095316 gtcaacaaaaattaatgtatctggtccaaattttgaaccatatacattaattttt 43095262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 382 - 415
Target Start/End: Complemental strand, 4915749 - 4915716
Alignment:
Q  382 attaagagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||||||    
T  4915749 attaagagaaatgatatttgaacatccattttgt 4915716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 382 - 415
Target Start/End: Complemental strand, 14010194 - 14010161
Alignment:
Q  382 attaagagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||||||    
T  14010194 attaagagaaatgatatttgaacatccattttgt 14010161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 30848641 - 30848690
Alignment:
Q  212 tacaaattttgaaccaaatatattaatttttattgaccgatttttgctta 261  Q
    |||||||||||||| ||||| |||||||||| |||||| |||||||||||    
T  30848641 tacaaattttgaacaaaatacattaatttttgttgaccaatttttgctta 30848690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 279
Target Start/End: Original strand, 12276816 - 12276936
Alignment:
Q  159 cctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgc 258  Q
    |||||| || || ||||||| |||  ||||||| ||||| |||||||||||||| |||| |||  || ||||| || || || | |||||| ||||||||    
T  12276816 cctccgtcctaaaatataagtaaagattggtcagcaaaagttaatgtatttgattcaaaatttatactaaatacatcaacttatgttgacctatttttgc 12276915  T
Q  259 ttataatttgaaacggaagga 279  Q
    ||||| |||| || |||||||    
T  12276916 ttatattttggaatggaagga 12276936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 54235234 - 54235322
Alignment:
Q  175 taagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttata 263  Q
    ||||||||| |  ||||| | ||||| ||||||||  |||||||||||||||||||| ||||| |||| |||| | ||||||| |||||    
T  54235234 taagcaaaaatgagtcaatataaattgatgtatttagtacaaattttgaaccaaatacattaacttttgttgagcaatttttgtttata 54235322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 55762905 - 55762969
Alignment:
Q  204 gtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataatttg 268  Q
    ||||||| |||||||||| || |||||||||||| |||| |||||| ||||||| ||||| ||||    
T  55762905 gtatttgctacaaatttttaatcaaatatattaacttttgttgaccaatttttgtttatattttg 55762969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 55762981 - 55762925
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgat 212  Q
    ||||||||| ||||| |||||| ||||| ||||||||||||| ||||| ||||||||    
T  55762981 ctccctccgtcccaaaatataaacaaaaattggtcaacaaaagttaatatatttgat 55762925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 415
Target Start/End: Original strand, 22819642 - 22819677
Alignment:
Q  380 ttattaagagaaatgatatttgaacatccattttgt 415  Q
    |||| |||||||||||||||||||||||||||||||    
T  22819642 ttatcaagagaaatgatatttgaacatccattttgt 22819677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 384 - 415
Target Start/End: Complemental strand, 28657503 - 28657472
Alignment:
Q  384 taagagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||||    
T  28657503 taagagaaatgatatttgaacatccattttgt 28657472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 4423153 - 4423247
Alignment:
Q  167 ccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgctta 261  Q
    |||| |||||||  ||| ||| |||| |||||||||| |||||||| |||| |||| |||||||| || || || |||||| | |||||||||||    
T  4423153 ccaaaatataagtgaaaattgatcaataaaaattaatatatttgattcaaaatttgtaccaaatacatcaacttatattgatccatttttgctta 4423247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 30848690 - 30848656
Alignment:
Q  175 taagcaaaagttggtcaacaaaaattaatgtattt 209  Q
    ||||||||| |||||||||||||||||||||||||    
T  30848690 taagcaaaaattggtcaacaaaaattaatgtattt 30848656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 412
Target Start/End: Original strand, 42959266 - 42959296
Alignment:
Q  382 attaagagaaatgatatttgaacatccattt 412  Q
    |||||||||||||||||||||||||||||||    
T  42959266 attaagagaaatgatatttgaacatccattt 42959296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Original strand, 43769721 - 43769751
Alignment:
Q  385 aagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||    
T  43769721 aagagaaatgatatttgaacatccattttgt 43769751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 51531505 - 51531563
Alignment:
Q  187 ggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttatt 245  Q
    |||||||||||||| ||||||||| | |||||||||||| | ||| ||| |||||||||    
T  51531505 ggtcaacaaaaattgatgtatttggtccaaattttgaacaagatacattcatttttatt 51531563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Complemental strand, 51573705 - 51573675
Alignment:
Q  385 aagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||    
T  51573705 aagagaaatgatatttgaacatccattttgt 51573675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 3249756 - 3249691
Alignment:
Q  202 atgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttataattt 267  Q
    |||||| || || ||||||||||||||||| ||||| |||| | |||| |||||| ||||||||||    
T  3249756 atgtatctggtataaattttgaaccaaatacattaacttttgtcgaccaatttttacttataattt 3249691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 4479612 - 4479669
Alignment:
Q  199 ttaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgattttt 256  Q
    ||||||||| || || |||||||||| ||||||||||||||||| |||| | ||||||    
T  4479612 ttaatgtatctggtataaattttgaatcaaatatattaatttttgttgatcaattttt 4479669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 415
Target Start/End: Original strand, 31657657 - 31657686
Alignment:
Q  386 agagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||    
T  31657657 agagaaatgatatttgaacatccattttgt 31657686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 415
Target Start/End: Complemental strand, 39345052 - 39345023
Alignment:
Q  386 agagaaatgatatttgaacatccattttgt 415  Q
    ||||||||||||||||||||||||||||||    
T  39345052 agagaaatgatatttgaacatccattttgt 39345023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 55827348 - 55827283
Alignment:
Q  166 cccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaata 231  Q
    ||||| |||||||||||| ||||||||||||| ||||| |||||| |  |||||||| | ||||||    
T  55827348 cccaaaatataagcaaaaattggtcaacaaaagttaatatatttggttaaaattttgtagcaaata 55827283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Original strand, 2999110 - 2999138
Alignment:
Q  385 aagagaaatgatatttgaacatccatttt 413  Q
    |||||||||||||||||||||||||||||    
T  2999110 aagagaaatgatatttgaacatccatttt 2999138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 12276926 - 12276830
Alignment:
Q  167 ccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgcttata 263  Q
    |||| |||||||||||| | |||||||| || || ||||||||  || |||||||||| |||||| ||||| ||||  ||||| || ||| ||||||    
T  12276926 ccaaaatataagcaaaaataggtcaacataagttgatgtatttagtataaattttgaatcaaatacattaacttttgctgaccaatctttacttata 12276830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Original strand, 21617183 - 21617211
Alignment:
Q  387 gagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||    
T  21617183 gagaaatgatatttgaacatccattttgt 21617211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 24980651 - 24980723
Alignment:
Q  189 tcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgaccgatttttgctta 261  Q
    |||||| || || |||||| ||| |||||||||| || ||||| |||||||||| |||||  |||||||||||    
T  24980651 tcaacataagttgatgtatctgacacaaattttgtacaaaatacattaatttttgttgacaaatttttgctta 24980723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Original strand, 51887663 - 51887691
Alignment:
Q  387 gagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||    
T  51887663 gagaaatgatatttgaacatccattttgt 51887691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2113 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 570 - 661
Alignment:
Q  156 ctccctccgacccaagatataagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaatttttattgac 248  Q
    ||||||||| |||||  ||||||||||| ||||| ||||||| ||||| |||||| |||||||||||||| ||||| | ||| |||| |||||    
T  570 ctccctccgtcccaaagtataagcaaaatttggt-aacaaaagttaatttatttggtacaaattttgaactaaatacaataacttttgttgac 661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 51233 - 51300
Alignment:
Q  175 taagcaaaagttggtcaacaaaaattaatgtatttgatacaaattttgaaccaaatatattaattttt 242  Q
    |||||||||| | ||||||| || || ||||||||| || ||||||||||| ||||| ||||||||||    
T  51233 taagcaaaagattgtcaacataagttgatgtatttggtataaattttgaactaaatacattaattttt 51300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Original strand, 44784 - 44814
Alignment:
Q  385 aagagaaatgatatttgaacatccattttgt 415  Q
    |||||||||||||||||||||||||||||||    
T  44784 aagagaaatgatatttgaacatccattttgt 44814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 36017 - 35976
Alignment:
Q  196 aaattaatgtatttgatacaaattttgaaccaaatatattaa 237  Q
    ||||| ||||||||||||||||||||| |||||||| |||||    
T  36017 aaattgatgtatttgatacaaattttgtaccaaatacattaa 35976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Original strand, 11932 - 11960
Alignment:
Q  385 aagagaaatgatatttgaacatccatttt 413  Q
    |||||||||||||||||||||||||||||    
T  11932 aagagaaatgatatttgaacatccatttt 11960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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