View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12999_low_11 (Length: 359)
Name: NF12999_low_11
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12999_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 26112987 - 26113215
Alignment:
| Q |
11 |
cataggaaccggatagatagagattgtgggttcgaataccctcgctaagtactaacatttctaacaactaattaattgttaaatataaaacctggtatgc |
110 |
Q |
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| T |
26112987 |
cataggaaccggagagatagagattgtgggttcgaataccctcgcgaagtactaatatttctaacaactaattagttgttaaatataaaacctggtatgc |
26113086 |
T |
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| Q |
111 |
aacaatgagtaatgagcattaaaataaaagaatggtggtactaccggaaattcgaaaagcatattcatttagtggaatttcatccttagaaacaactgag |
210 |
Q |
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| T |
26113087 |
aacaatgagtaatgagcattaaaataaaagaatggaggcactaccggaaattcgaaaagcatattcatttagtggaatttcatccttagaaacaactgag |
26113186 |
T |
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| Q |
211 |
aatgagtacctgcaaaagcacaaccaaaa |
239 |
Q |
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| T |
26113187 |
aatgaatacctgcaaaatcacaacaaaaa |
26113215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 238 - 345
Target Start/End: Original strand, 26113250 - 26113357
Alignment:
| Q |
238 |
aataaattaaaaaactctgcatataaattatgttacattggttgttggacacttcttttatatgtaataaaatttagattgagtccttttcatatgaatc |
337 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26113250 |
aataaattaaaaaactctgcatataaatcatgttacattggttgttggacacttcttttatatgtaataaaatttagattgagtccttttcatatgaatc |
26113349 |
T |
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| Q |
338 |
aataattg |
345 |
Q |
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| T |
26113350 |
aataattg |
26113357 |
T |
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