View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12999_low_12 (Length: 356)
Name: NF12999_low_12
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12999_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 51728761 - 51729085
Alignment:
| Q |
19 |
tatcccacaaaagccatgtttggaatcaatggatggatggttcctctatcatgattagcataaatcaagctattagtttctctagtatattcatttaatt |
118 |
Q |
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| T |
51728761 |
tatcccacgaaagccatgtttggaatcaatggatggatggttcctctatcatgattagcataaatcaagctattagtttctctagtatattcatttaatt |
51728860 |
T |
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| Q |
119 |
tcaaagcgcgaaatgaatcacaaacaagtacttcttacctgtacaaaggtataaggccagaggggtactccaacaggctacaaaaaggctctggtaaaat |
218 |
Q |
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| T |
51728861 |
tcaaagcgcgaaatgaatcacaaacaagtacttcttacctgtacaaaggtataaggccagaggggtactccaacaggctacaaaaaggctctggtaaaat |
51728960 |
T |
|
| Q |
219 |
ggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcggcttccacctcagtgttatcttcaaatttgattccttcattacaaaac |
318 |
Q |
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| T |
51728961 |
ggttttgatctttttctttccattaaaaccagttgcaaggatcactacatcggcttccacctcagtgttatcttcaaattcgattccttcattacaaaac |
51729060 |
T |
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| Q |
319 |
caccactttgatgcttttttaagta |
343 |
Q |
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| T |
51729061 |
caccactttgatgcttttttaagta |
51729085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 51723519 - 51723591
Alignment:
| Q |
23 |
ccacaaaagccatgtttggaatcaatggatggatggttcctctatcatgattagcataaatcaagctattagt |
95 |
Q |
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| T |
51723519 |
ccacaaaagccttgtttgaaatcaatggatggatagttctccgatcacgattagaatgactcaagctattagt |
51723591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 338
Target Start/End: Complemental strand, 19056891 - 19056734
Alignment:
| Q |
181 |
gggtactccaacaggctacaaaaaggctctggtaaaatggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcggcttccacct |
280 |
Q |
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||||| ||||||| |||| ||||||||||||| ||||||||||||| ||| || || |||||| ||||||||||||| | || ||||| || || | | |
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| T |
19056891 |
gggtattccaacaagctagaaaaaggctctggcaaaatggttttgagcttctttttcccatcataaccagttgcaagaagaacaacatcagcatcaattt |
19056792 |
T |
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| Q |
281 |
cagtgttatcttcaaatttgattccttcattacaaaaccaccactttgatgctttttt |
338 |
Q |
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| T |
19056791 |
tagtgttgtcatcaaattcaattcctccattccaaaaacaccactttgatgctctttt |
19056734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 338
Target Start/End: Original strand, 19188308 - 19188465
Alignment:
| Q |
181 |
gggtactccaacaggctacaaaaaggctctggtaaaatggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcggcttccacct |
280 |
Q |
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| T |
19188308 |
gggtattccaacaagctagaaaaaggctctggcaaaatggttttgagcttctttttcccatcataaccagttgcaagaagaacaacatcagcatcaattt |
19188407 |
T |
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| Q |
281 |
cagtgttatcttcaaatttgattccttcattacaaaaccaccactttgatgctttttt |
338 |
Q |
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|||||| || ||||||| |||||| |||| ||||| ||||||||||||||| |||| |
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| T |
19188408 |
tagtgttgtcatcaaattcaattcctccattccaaaaacaccactttgatgctctttt |
19188465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 19059564 - 19059514
Alignment:
| Q |
17 |
catatcccacaaaagccatgtttggaatcaatggatggatggttcctctat |
67 |
Q |
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|||| |||||||| ||||||||||||||||||||||| | |||||||||| |
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| T |
19059564 |
cataacccacaaaggccatgtttggaatcaatggatgaacagttcctctat |
19059514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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