View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12999_low_14 (Length: 317)
Name: NF12999_low_14
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12999_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 315
Target Start/End: Original strand, 55310227 - 55310529
Alignment:
| Q |
20 |
ctcccttcaaaaataaccaagaaatgaattaatagaaagaagtggttta-ctattaagagaaatataacaaagatataaaaacataaggaagagggatgg |
118 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55310227 |
ctcccttcaaaa-taaccaagaaatgaattaatagaaagaagtggtttaactattaagagaaatataacaaagatataaaaacataaggaagagggatga |
55310325 |
T |
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| Q |
119 |
tatacctgtttgatggtaagcataggcttgagctgaaataagggaaaaatgtaaagttggatgggaaagaaaata-agaaatatgaatgaaacggggaat |
217 |
Q |
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| T |
55310326 |
tatacctgtttgatggtaagcataggcttgagctgaaataaggaaaaaatgtaaagttggatgggaaagaaaatagagaaatatgaatgaaacggggaat |
55310425 |
T |
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| Q |
218 |
aaacagaaccacaaattgtatgcttataaagaagagnnnnnnnccacgaattgtatgaatggttt------ctggccgccaaggatcgttttcatctcac |
311 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
55310426 |
aaacagaaccacaaattgtatgcttataaagaagaagaaaaaaccacgaattgtatgaatggtttctggccctggccgccaaggatcgttttcatctccc |
55310525 |
T |
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| Q |
312 |
tcga |
315 |
Q |
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|||| |
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| T |
55310526 |
tcga |
55310529 |
T |
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