View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12999_low_16 (Length: 270)
Name: NF12999_low_16
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12999_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 5174169 - 5173912
Alignment:
| Q |
1 |
tttgtcaccttttcataactgctatgcgatgataatataacataattagttgtccaaaacactacacaacatatattaatttcataacaatacagcttgt |
100 |
Q |
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| T |
5174169 |
tttgtcaccttttcataactgctatgcgatgataatataacataattagttgtccaaaacactacataacatatattaatttcataacaatacagcttgt |
5174070 |
T |
|
| Q |
101 |
ctcctttgtaaaacctttaactttgtgtcgatatcaacaatacggcctgcaattgtgacattctaatatatatactcacaaaaataaattatgtgcatac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5174069 |
ctcctttgtaaaacctttaactttgtgtcgatatcaacaatacggcctgcaattgtgacattctaatatatatactcacaaaattaaattatgtgcatac |
5173970 |
T |
|
| Q |
201 |
actccaaaaacacttgaatgaaatgactcgggtctcttacaacataacataggtccta |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173969 |
actccaaaaacacttgaatgaaatgactcgggtctcttacaacataacataggtccta |
5173912 |
T |
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