View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12999_low_2 (Length: 630)

Name: NF12999_low_2
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12999_low_2
NF12999_low_2
[»] chr4 (22 HSPs)
chr4 (56-330)||(4701281-4701555)
chr4 (420-630)||(4701665-4701875)
chr4 (547-626)||(31844749-31844828)
chr4 (527-630)||(48740033-48740140)
chr4 (547-630)||(39868949-39869030)
chr4 (547-630)||(47874591-47874674)
chr4 (547-630)||(47878497-47878580)
chr4 (547-630)||(53771062-53771145)
chr4 (545-630)||(26172955-26173040)
chr4 (547-627)||(54574452-54574532)
chr4 (555-627)||(42278084-42278156)
chr4 (547-630)||(26170667-26170750)
chr4 (547-630)||(26685435-26685513)
chr4 (448-517)||(4460329-4460398)
chr4 (454-518)||(4460166-4460230)
chr4 (477-517)||(4460525-4460565)
chr4 (448-504)||(49458233-49458289)
chr4 (579-630)||(19050297-19050348)
chr4 (475-518)||(51356039-51356082)
chr4 (552-630)||(4703230-4703308)
chr4 (476-522)||(35835730-35835776)
chr4 (548-630)||(42391899-42391983)
[»] scaffold0034 (1 HSPs)
scaffold0034 (547-630)||(116082-116165)
[»] chr7 (35 HSPs)
chr7 (545-630)||(48646074-48646159)
chr7 (547-629)||(43457484-43457566)
chr7 (547-624)||(44333166-44333243)
chr7 (547-627)||(8048800-8048880)
chr7 (458-521)||(41415643-41415706)
chr7 (547-630)||(48777283-48777366)
chr7 (547-630)||(48788685-48788768)
chr7 (550-630)||(39708133-39708213)
chr7 (547-630)||(35727726-35727809)
chr7 (547-630)||(44334462-44334545)
chr7 (552-630)||(34888936-34889014)
chr7 (446-507)||(41415842-41415903)
chr7 (547-630)||(8374941-8375024)
chr7 (547-630)||(10899086-10899169)
chr7 (556-630)||(8375596-8375670)
chr7 (549-630)||(7258304-7258385)
chr7 (549-630)||(13578333-13578414)
chr7 (477-521)||(2407348-2407392)
chr7 (448-508)||(2407491-2407550)
chr7 (558-630)||(30925021-30925093)
chr7 (547-630)||(35729099-35729182)
chr7 (458-521)||(40352642-40352705)
chr7 (552-627)||(46286535-46286610)
chr7 (552-630)||(7259697-7259775)
chr7 (552-630)||(48647456-48647534)
chr7 (545-630)||(12220048-12220133)
chr7 (557-630)||(12223712-12223785)
chr7 (553-598)||(24934837-24934882)
chr7 (550-630)||(2677799-2677879)
chr7 (552-630)||(19433947-19434025)
chr7 (568-630)||(44529076-44529138)
chr7 (547-620)||(21062844-21062917)
chr7 (485-521)||(1780544-1780580)
chr7 (485-521)||(7875714-7875750)
chr7 (547-627)||(42477408-42477487)
[»] chr8 (19 HSPs)
chr8 (547-630)||(32898458-32898541)
chr8 (547-630)||(35177422-35177505)
chr8 (549-630)||(5965455-5965536)
chr8 (452-521)||(18896424-18896493)
chr8 (547-630)||(35178817-35178900)
chr8 (547-629)||(10407598-10407680)
chr8 (458-518)||(18896776-18896836)
chr8 (547-627)||(30134593-30134673)
chr8 (448-508)||(30491635-30491695)
chr8 (448-507)||(18896628-18896687)
chr8 (547-628)||(41754810-41754891)
chr8 (453-521)||(30491827-30491895)
chr8 (559-630)||(28619028-28619099)
chr8 (547-598)||(33314888-33314939)
chr8 (478-508)||(4830385-4830415)
chr8 (458-508)||(29919078-29919128)
chr8 (547-600)||(41754025-41754078)
chr8 (458-502)||(11873516-11873560)
chr8 (553-625)||(41121142-41121214)
[»] chr3 (35 HSPs)
chr3 (547-630)||(20464096-20464179)
chr3 (547-630)||(17700545-17700628)
chr3 (547-630)||(17701932-17702015)
chr3 (547-630)||(19114560-19114643)
chr3 (448-508)||(36618738-36618798)
chr3 (552-630)||(11773064-11773142)
chr3 (547-630)||(2592020-2592103)
chr3 (551-630)||(45600952-45601030)
chr3 (547-630)||(48573012-48573095)
chr3 (556-630)||(53959113-53959187)
chr3 (565-630)||(48574472-48574537)
chr3 (454-518)||(23564121-23564185)
chr3 (555-630)||(2591662-2591737)
chr3 (458-517)||(29070174-29070233)
chr3 (547-630)||(33428448-33428531)
chr3 (547-630)||(48808393-48808476)
chr3 (478-517)||(49261977-49262016)
chr3 (547-630)||(52317006-52317089)
chr3 (547-630)||(52318330-52318413)
chr3 (547-630)||(55389482-55389565)
chr3 (452-518)||(30889409-30889475)
chr3 (552-630)||(36278984-36279062)
chr3 (476-521)||(30889093-30889138)
chr3 (458-518)||(29069821-29069880)
chr3 (547-627)||(34263832-34263912)
chr3 (547-619)||(47427887-47427959)
chr3 (559-630)||(36280330-36280401)
chr3 (458-517)||(36618932-36618991)
chr3 (547-630)||(47075364-47075447)
chr3 (557-630)||(49261550-49261620)
chr3 (547-630)||(55388100-55388183)
chr3 (455-521)||(52417867-52417933)
chr3 (547-592)||(19331135-19331180)
chr3 (547-627)||(3671065-3671145)
chr3 (448-508)||(29069985-29070045)
[»] chr2 (21 HSPs)
chr2 (547-630)||(31091540-31091623)
chr2 (547-630)||(32766252-32766335)
chr2 (565-630)||(14704051-14704116)
chr2 (547-630)||(17330243-17330326)
chr2 (547-630)||(17466841-17466924)
chr2 (552-630)||(33161799-33161877)
chr2 (547-627)||(40000350-40000430)
chr2 (565-627)||(32764983-32765045)
chr2 (476-518)||(38258783-38258825)
chr2 (557-629)||(21733785-21733860)
chr2 (557-630)||(38853792-38853865)
chr2 (547-630)||(2910127-2910210)
chr2 (547-630)||(24459459-24459542)
chr2 (547-630)||(31090191-31090274)
chr2 (547-630)||(34582683-34582766)
chr2 (547-629)||(34037687-34037769)
chr2 (448-506)||(43519263-43519320)
chr2 (545-630)||(24458085-24458170)
chr2 (581-630)||(38985002-38985051)
chr2 (547-623)||(5915012-5915088)
chr2 (468-504)||(38258605-38258641)
[»] chr1 (21 HSPs)
chr1 (547-630)||(7945567-7945650)
chr1 (547-630)||(5782441-5782524)
chr1 (547-630)||(9339673-9339756)
chr1 (547-630)||(32665783-32665866)
chr1 (451-518)||(35820103-35820170)
chr1 (545-630)||(11060797-11060882)
chr1 (547-630)||(10333199-10333282)
chr1 (520-630)||(8975155-8975269)
chr1 (547-627)||(6612446-6612526)
chr1 (547-630)||(5783122-5783205)
chr1 (547-630)||(7944182-7944265)
chr1 (559-630)||(9341038-9341109)
chr1 (547-630)||(10333013-10333096)
chr1 (547-630)||(22856707-22856790)
chr1 (547-630)||(52440572-52440655)
chr1 (448-518)||(7750653-7750723)
chr1 (453-521)||(23395111-23395178)
chr1 (477-521)||(35819807-35819851)
chr1 (567-629)||(25037925-25037987)
chr1 (567-629)||(25043137-25043199)
chr1 (559-628)||(3117688-3117757)
[»] chr5 (23 HSPs)
chr5 (545-629)||(8074476-8074560)
chr5 (547-630)||(2464696-2464779)
chr5 (547-630)||(28591127-28591210)
chr5 (552-630)||(4592893-4592971)
chr5 (547-630)||(546049-546132)
chr5 (547-630)||(19182977-19183060)
chr5 (549-630)||(16611757-16611838)
chr5 (547-630)||(2466787-2466870)
chr5 (558-630)||(19186233-19186305)
chr5 (458-521)||(5003498-5003561)
chr5 (547-630)||(9537050-9537132)
chr5 (458-521)||(16185190-16185252)
chr5 (448-503)||(16185387-16185442)
chr5 (457-518)||(17483514-17483575)
chr5 (448-508)||(17483327-17483387)
chr5 (547-627)||(21069316-21069396)
chr5 (547-627)||(25590458-25590537)
chr5 (547-630)||(9538062-9538145)
chr5 (458-521)||(16644978-16645041)
chr5 (547-630)||(32640315-32640398)
chr5 (547-630)||(14891160-14891239)
chr5 (448-517)||(5003660-5003729)
chr5 (477-521)||(29027975-29028019)
[»] chr6 (10 HSPs)
chr6 (547-630)||(30748026-30748109)
chr6 (547-627)||(31218982-31219062)
chr6 (553-598)||(6468826-6468871)
chr6 (477-508)||(8382260-8382291)
chr6 (547-630)||(31219173-31219256)
chr6 (448-505)||(2704560-2704617)
chr6 (448-517)||(11171460-11171528)
chr6 (448-500)||(1436180-1436231)
chr6 (458-518)||(6063039-6063099)
chr6 (477-521)||(8382094-8382138)
[»] scaffold0039 (2 HSPs)
scaffold0039 (547-630)||(79100-79183)
scaffold0039 (547-599)||(74357-74409)
[»] scaffold0767 (1 HSPs)
scaffold0767 (547-630)||(5626-5709)
[»] scaffold0007 (3 HSPs)
scaffold0007 (458-521)||(201310-201373)
scaffold0007 (452-517)||(201667-201732)
scaffold0007 (448-508)||(201471-201531)
[»] scaffold0010 (1 HSPs)
scaffold0010 (458-503)||(122416-122461)
[»] scaffold0734 (1 HSPs)
scaffold0734 (477-521)||(1906-1950)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 56 - 330
Target Start/End: Original strand, 4701281 - 4701555
Alignment:
Q  56 gagaacatgtaacacttgtggcacaccatgtgtgtaatttatattgagcaatgggtaacccacatggattgatacaatggtatatgtttgaaatattaat 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  4701281 gagaacatgtaacacttgtggcacaccatgtgtgtaatttatattgagcaatgggtaacccacatggattgatacaatggtataaatttgaaatattaat 4701380  T
Q  156 gtgctcgtcttaagattttaagctatccttctaacg-cattttatgtgggatatttcatacacaagggcttttcaagtggacactgggatcgatttttca 254  Q
    |||||||||||||||||| ||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  4701381 gtgctcgtcttaagatttcaagttatccttctaacgtcaatttatgtgggatatttcatacacaagggcttttcaagtggacgctgcgatcgatttttca 4701480  T
Q  255 aattaatcaatcattgagttggatacggagtttaaaaataataattgaacaatgagaaatgatatttgtataacta 330  Q
    |||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4701481 aattaatcaatcattgagct-gatacggagtttaaaaataataattggacaatgagaaatgatatttgtataacta 4701555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 420 - 630
Target Start/End: Original strand, 4701665 - 4701875
Alignment:
Q  420 ggtaaaattatggttgtttcaaaagttgtttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaac 519  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  4701665 ggtaaaattatggttgtttcaaaagttgtttattaggcttaattgcagttttgatcttctaagtatcacaatcttacgattttggccccatataaaaaac 4701764  T
Q  520 aagagtcaatggtcactttagtccatatgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgtta 619  Q
    |||||| ||| ||||||||||||||| | |||||||||||||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||| ||    
T  4701765 aagagtaaattgtcactttagtccatctacacctcgctgtcacaaaggtctatgacttatgattaaatacaaagaagtccccgactatgcacttccgcta 4701864  T
Q  620 tcactttagtc 630  Q
    |||||||||||    
T  4701865 tcactttagtc 4701875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 547 - 626
Target Start/End: Original strand, 31844749 - 31844828
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcacttt 626  Q
    ||||||||||||||||| |||||||||||| | ||||||||||||| ||||||| |||| | ||||||| ||||||||||    
T  31844749 tgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtccctaactctacacttcccttatcacttt 31844828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 527 - 630
Target Start/End: Complemental strand, 48740140 - 48740033
Alignment:
Q  527 aatggtcactttagtccatat----gcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatca 622  Q
    ||||||||||||||||||| |    |||||||  ||||||  || ||||||||| || |||||||||||| |||||||||||| |||||||| |||||||    
T  48740140 aatggtcactttagtccatgtctctgcacctcattgtcacgtagatccctgactcataattaaatacaaagaagtccccaactctgcacttctgttatca 48740041  T
Q  623 ctttagtc 630  Q
    ||||||||    
T  48740040 ctttagtc 48740033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 39868949 - 39869030
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||| |||||||||||||||| || |||||||||||| ||||   | ||| ||||||||||||||||||||||||    
T  39868949 tgcacctcgctgttacaaaggtccctgactcataattaaatacaaacaagt--tcgactctgcacttccgttatcactttagtc 39869030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 47874591 - 47874674
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||| ||||| |||||||||||| | ||||||||||||| |||||||  | | ||||||||||||||||||||||||    
T  47874591 tgcagctcgctatcacataggtccctgactcaagattaaatacaaataagtccctgattctgcacttccgttatcactttagtc 47874674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 47878580 - 47878497
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||| ||| ||||||||||||   ||||||||||||| |||||||  ||| | ||||||||||||||||||||||    
T  47878580 tgcacctcgctgttacataggtccctgactctggattaaatacaaataagtccctgactctacacttccgttatcactttagtc 47878497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 53771145 - 53771062
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||| ||||||| |||||||||||| |  |||||||||||| ||| |||  ||| ||||||||||||||||||||||||    
T  53771145 tgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagcccctgactctgcacttccgttatcactttagtc 53771062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 630
Target Start/End: Complemental strand, 26173040 - 26172955
Alignment:
Q  545 tatgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||||||  |||||| |||||||| ||||| | ||||||||||||| ||||| |  ||| ||||||||||||||||||||||||    
T  26173040 tatgcaccttactgtcagaaaggtccttgactcaagattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 26172955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 547 - 627
Target Start/End: Original strand, 54574452 - 54574532
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcacttta 627  Q
    |||| |||||||||||| ||||| |||||| | ||||||||||||| |||| |  |||| |||||||||||||||||||||    
T  54574452 tgcatctcgctgtcacataggtctctgactcaggattaaatacaaataagttcttaactctgcacttccgttatcacttta 54574532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 555 - 627
Target Start/End: Original strand, 42278084 - 42278156
Alignment:
Q  555 gctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcacttta 627  Q
    ||||||||| ||||||||||||   ||||||||||||| |||| ||  ||| |||||||||||||||||||||    
T  42278084 gctgtcacataggtccctgactcgggattaaatacaaataagttcctgactctgcacttccgttatcacttta 42278156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 26170667 - 26170750
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||| ||| ||||| ||  |||||||| ||||||||||||| |||| ||  ||| ||||||||| ||||||||||||||    
T  26170667 tgcacctcgttgttacaaaagtatctgacttaagattaaatacaaataagttccttactctgcacttccattatcactttagtc 26170750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 26685513 - 26685435
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||| |||||||| ||||     |||||||| | ||||||   ||||||||||||||||||||||||||||    
T  26685513 tgcacctcgctgtcacataggtccctcactt-----taaatacatagaagtccttgactatgcacttccgttatcactttagtc 26685435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 517
Target Start/End: Original strand, 4460329 - 4460398
Alignment:
Q  448 tttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaa 517  Q
    |||||||| |||||||||| ||||| | || |||||| |||||||||||||||||| |||| || |||||    
T  4460329 tttattagatttaattgcagttttggtatcttaagtaccacaatcttgcgattttgaccccctaaaaaaa 4460398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 518
Target Start/End: Original strand, 4460166 - 4460230
Alignment:
Q  454 aggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaa 518  Q
    ||||||||| | | |||||  ||||||||||||||||||||| ||||||| |||| |||||||||    
T  4460166 aggtttaatcgtagttttggcctcctaagtatcacaatcttgtgattttgaccccctataaaaaa 4460230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 517
Target Start/End: Complemental strand, 4460565 - 4460525
Alignment:
Q  477 cctaagtatcacaatcttgcgattttggccccatataaaaa 517  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  4460565 cctaagtatcacaatcttgcgattttggtcccctataaaaa 4460525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 504
Target Start/End: Complemental strand, 49458289 - 49458233
Alignment:
Q  448 tttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttgg 504  Q
    ||||||||| |||||| ||||||||  ||||||| ||||||||| ||||||||||||    
T  49458289 tttattaggcttaattacaattttggcctcctaaatatcacaattttgcgattttgg 49458233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 630
Target Start/End: Original strand, 19050297 - 19050348
Alignment:
Q  579 tgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||||||||||| ||||| |  ||| ||||||||||||||||||||||||    
T  19050297 tgattaaatacaaagaagtctcggactctgcacttccgttatcactttagtc 19050348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 518
Target Start/End: Complemental strand, 51356082 - 51356039
Alignment:
Q  475 ctcctaagtatcacaatcttgcgattttggccccatataaaaaa 518  Q
    |||||| || |||||||||||||||||||||||| |||||||||    
T  51356082 ctcctatgtttcacaatcttgcgattttggccccctataaaaaa 51356039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 552 - 630
Target Start/End: Complemental strand, 4703308 - 4703230
Alignment:
Q  552 ctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||||||||| |||||||| ||| |  |||||||||||| |||||    ||| | ||||||||||||||||||||||    
T  4703308 ctcgctgtcacataggtccctaactcagaattaaatacaaagaagtctttgactgtacacttccgttatcactttagtc 4703230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 522
Target Start/End: Original strand, 35835730 - 35835776
Alignment:
Q  476 tcctaagtatcacaatcttgcgattttggccccatataaaaaacaag 522  Q
    |||||||||||||||||||||||||||| |  | |||||||||||||    
T  35835730 tcctaagtatcacaatcttgcgattttgacttcctataaaaaacaag 35835776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 630
Target Start/End: Complemental strand, 42391983 - 42391899
Alignment:
Q  548 gcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtcccca--actatgcacttccgttatcactttagtc 630  Q
    ||||||| |||||||| ||||| |||||| |||||||||||||||  |||||| |  | | ||||||||| |||||| |||||||    
T  42391983 gcacctcactgtcacataggtctctgactcatgattaaatacaaattagtccctaataatgtgcacttcctttatcagtttagtc 42391899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 116082 - 116165
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||||||| |||||||||||| | ||||||||||||| |||||||  ||||||||||||||||||||||||||||    
T  116082 tgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactatgcacttccgttatcactttagtc 116165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 545 - 630
Target Start/End: Original strand, 48646074 - 48646159
Alignment:
Q  545 tatgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||||| |||||||||||| | ||||||||||||| |||||||  ||| | ||||||||||||||||||||||    
T  48646074 tatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctacacttccgttatcactttagtc 48646159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 547 - 629
Target Start/End: Original strand, 43457484 - 43457566
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagt 629  Q
    |||| ||||||||| || |||||||||||| | ||||||||||||| |||||||| ||| |||||||||||||||||||||||    
T  43457484 tgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtccccgactctgcacttccgttatcactttagt 43457566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 547 - 624
Target Start/End: Original strand, 44333166 - 44333243
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcact 624  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||| ||||| |  ||| ||||||||||||||||||    
T  44333166 tgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgcacttccgttatcact 44333243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 547 - 627
Target Start/End: Complemental strand, 8048880 - 8048800
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcacttta 627  Q
    |||||||||||| |||||||||| |||||| | ||||||||||||| ||||| || ||| |||||||||||||||||||||    
T  8048880 tgcacctcgctgacacaaaggtctctgactcaagattaaatacaaagaagtctccgactctgcacttccgttatcacttta 8048800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 458 - 521
Target Start/End: Original strand, 41415643 - 41415706
Alignment:
Q  458 ttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    ||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  41415643 ttaattgcagttttggtcacctaagtatcacaatcttgcgattttggccccttataaaaaacaa 41415706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 48777283 - 48777366
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||||||| | |||||||||| ||||||||||||||| || ||||  ||| ||||||||||||||||||||||||    
T  48777283 tgcagctcgctgtcacataagtccctgactcatgattaaatacaaataattccctgactctgcacttccgttatcactttagtc 48777366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 48788768 - 48788685
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||| |||||||||||| || |||||||| ||| ||||| |  ||| ||||||||||||||||||||||||    
T  48788768 tgcacctcgctgtcacataggtccctgactcataattaaatataaataagtctctgactctgcacttccgttatcactttagtc 48788685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 550 - 630
Target Start/End: Original strand, 39708133 - 39708213
Alignment:
Q  550 acctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||| ||||||||||||| ||||| | |||| |||||||| ||||| || ||| ||||||||||||||||||||||||    
T  39708133 acctcgccgtcacaaaggtccatgactcaagattgaatacaaagaagtcaccgactttgcacttccgttatcactttagtc 39708213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 35727726 - 35727809
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||| |||||||||||| | ||||||||| ||| ||||| |  ||| ||||| ||||||||||||||||||    
T  35727726 tgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgcacatccgttatcactttagtc 35727809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 44334545 - 44334462
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||| ||| |||||||||||| ||||||||||| ||| |||||||  ||| ||||||||| ||||||||||||||    
T  44334545 tgcagctcgctgttacataggtccctgactcatgattaaatataaataagtccctgactctgcacttccattatcactttagtc 44334462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 552 - 630
Target Start/End: Complemental strand, 34889014 - 34888936
Alignment:
Q  552 ctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||||||||||||||| || ||| ||||||||||| ||| | ||||  |||| ||||||||||||||||||||||||    
T  34889014 ctcgctgtcacaaaggtctctcactcatgattaaatataaagatgtccttaactctgcacttccgttatcactttagtc 34888936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 446 - 507
Target Start/End: Complemental strand, 41415903 - 41415842
Alignment:
Q  446 tgtttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccc 507  Q
    |||||||||||| |||||||| |||||  ||| |||||||||||||||||||||||||||||    
T  41415903 tgtttattaggtctaattgcagttttggcctcttaagtatcacaatcttgcgattttggccc 41415842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 8374941 - 8375024
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||| ||||| |||||| |  |||||||||||||||||  |  | | ||||||||||||||||||||||||    
T  8374941 tgcacctcgctgtcacataggtctctgactcagaattaaatacaaaaaagtttctgattttgcacttccgttatcactttagtc 8375024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 10899169 - 10899086
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||| || ||| ||||  | ||||||||||||| ||||| |  ||| ||||||||||||||||||||||||    
T  10899169 tgcacctcgctgtcacatagatccttgacccaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 10899086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 630
Target Start/End: Complemental strand, 8375670 - 8375596
Alignment:
Q  556 ctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||||| |||||||||||| ||||||||||||||| ||||  |  ||| |||||||||||||||| |||||||    
T  8375670 ctgtcacataggtccctgactcatgattaaatacaaagaagtttctgactctgcacttccgttatcaatttagtc 8375596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 549 - 630
Target Start/End: Original strand, 7258304 - 7258385
Alignment:
Q  549 cacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||| ||||||| |||||||| ||| | ||||||||||||| ||||| |  ||| |||||||| |||||||||||||||    
T  7258304 cacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcacttctgttatcactttagtc 7258385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 549 - 630
Target Start/End: Complemental strand, 13578414 - 13578333
Alignment:
Q  549 cacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||| |||| || |||||| |  |||||||||||| ||||| |  ||| ||||||||||||||||||||||||    
T  13578414 cacctcgctgtcataaagatcactgactcagaattaaatacaaataagtcactgactctgcacttccgttatcactttagtc 13578333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 477 - 521
Target Start/End: Original strand, 2407348 - 2407392
Alignment:
Q  477 cctaagtatcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||    
T  2407348 cctaagtatcacaatcttgcgattttggtcccctataaaaaacaa 2407392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 508
Target Start/End: Original strand, 2407491 - 2407550
Alignment:
Q  448 tttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggcccc 508  Q
    ||||||||||||||||||| ||||| || |||||||||||||||||| |||||| ||||||    
T  2407491 tttattaggtttaattgcagttttggtc-cctaagtatcacaatcttacgatttcggcccc 2407550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 558 - 630
Target Start/End: Complemental strand, 30925093 - 30925021
Alignment:
Q  558 gtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||| |||||| ||||| | ||||||||||||| ||||| |  |||||||||||||||||| |||||||||    
T  30925093 gtcacataggtccttgactcaggattaaatacaaataagtctctgactatgcacttccgttattactttagtc 30925021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 35729182 - 35729099
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||||||| |||||| ||||||| ||||| ||||||| ||||| |  ||| |||||||||| ||||||| |||||    
T  35729182 tgcagctcgctgtcacataggtccttgacttaggattacatacaaataagtcactgactctgcacttccgctatcactgtagtc 35729099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 521
Target Start/End: Original strand, 40352642 - 40352705
Alignment:
Q  458 ttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    ||||||| | |||||| | |||||||||||||||||||||||||||| | | ||||||||||||    
T  40352642 ttaattgtagttttgaccccctaagtatcacaatcttgcgattttggtcgcctataaaaaacaa 40352705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 552 - 627
Target Start/End: Original strand, 46286535 - 46286610
Alignment:
Q  552 ctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcacttta 627  Q
    |||||||| | |||||||||||||| | ||||||||||||| ||||| |  ||| |||||||| ||||||||||||    
T  46286535 ctcgctgttagaaaggtccctgactcaggattaaatacaaataagtctctgactctgcacttctgttatcacttta 46286610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 630
Target Start/End: Complemental strand, 7259775 - 7259697
Alignment:
Q  552 ctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||  |||| |||| | | ||||||||||||| |||||||  ||| | ||||||||||||||||||||||    
T  7259775 ctcgctgtcacatgggtctctgattcaggattaaatacaaataagtccctgactctacacttccgttatcactttagtc 7259697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 630
Target Start/End: Complemental strand, 48647534 - 48647456
Alignment:
Q  552 ctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||| ||||| |||||||||||| | ||||||||||||| ||||| |  ||| |||||||  |||||||||||||||    
T  48647534 ctcgctatcacataggtccctgactcaggattaaatacaaataagtctctcactctgcacttttgttatcactttagtc 48647456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 545 - 630
Target Start/End: Original strand, 12220048 - 12220133
Alignment:
Q  545 tatgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||| |||||||||| | ||||||| | ||||||||| ||| ||||| |  ||| |||||||| | |||||||||||||    
T  12220048 tatgcacctcgttgtcacaaagattcctgactcaagattaaatagaaagaagtctctgactctgcacttctgatatcactttagtc 12220133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 557 - 630
Target Start/End: Complemental strand, 12223785 - 12223712
Alignment:
Q  557 tgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||| |||||||||||| | ||||||||| ||| |||||||  ||| |||| ||||||||| |||||||||    
T  12223785 tgtcacataggtccctgactcaggattaaatataaagaagtccctgactctgcagttccgttattactttagtc 12223712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 553 - 598
Target Start/End: Original strand, 24934837 - 24934882
Alignment:
Q  553 tcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtc 598  Q
    ||||||||||||||||| |||||||| |||||||||||||| ||||    
T  24934837 tcgctgtcacaaaggtctctgacttaggattaaatacaaaatagtc 24934882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 630
Target Start/End: Complemental strand, 2677879 - 2677799
Alignment:
Q  550 acctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||| |||||||||||||  ||||| |||||||||||||||  | |||| || | ||||||| |||||||| |||||||    
T  2677879 acctcgttgtcacaaaggtctatgactcatgattaaatacaaagtattccctaaatgtgcactttcgttatcagtttagtc 2677799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 552 - 630
Target Start/End: Complemental strand, 19434025 - 19433947
Alignment:
Q  552 ctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| ||||||||||||| |||| ||| ||||||||| ||  ||||| || |||  ||||||| |||||||||||||||    
T  19434025 ctcgttgtcacaaaggtctctgatttaggattaaatataaggaagtcaccgactccgcacttcagttatcactttagtc 19433947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 630
Target Start/End: Original strand, 44529076 - 44529138
Alignment:
Q  568 tccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||| ||||||||||||||| ||||| || |||   |||||| |||||||||||||||    
T  44529076 tccctgactcatgattaaatacaaataagtctccgactcaacacttctgttatcactttagtc 44529138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 620
Target Start/End: Original strand, 21062844 - 21062917
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttat 620  Q
    ||||||||||||||| |||||||| ||||| | ||||||||||| | |||||| |  || ||||| ||||||||    
T  21062844 tgcacctcgctgtcataaaggtccttgactcaggattaaatacatagaagtcctcggctctgcacctccgttat 21062917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 1780580 - 1780544
Alignment:
Q  485 tcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    |||||||||||||||||||||| | ||||||||||||    
T  1780580 tcacaatcttgcgattttggcctcctataaaaaacaa 1780544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 521
Target Start/End: Original strand, 7875714 - 7875750
Alignment:
Q  485 tcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  7875714 tcacaatcttgcgattttggtcccctataaaaaacaa 7875750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 627
Target Start/End: Original strand, 42477408 - 42477487
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcacttta 627  Q
    ||||||||| |||| || ||||| |||||| | ||||||||||||| |||| ||  ||| |||||||||||||||| ||||    
T  42477408 tgcacctcgttgtcgcataggtctctgactcaggattaaatacaaataagt-cctgactctgcacttccgttatcatttta 42477487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 32898541 - 32898458
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| ||| |||||||| |||||||||||||| ||||||||||||| |||||||  ||| ||||||||||||||||||||||||    
T  32898541 tgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcacttccgttatcactttagtc 32898458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 35177422 - 35177505
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||||||| ||||||||||||   ||||||||||||| |||||||  ||| ||||||||||||||||||||||||    
T  35177422 tgcagctcgctgtcacataggtccctgactccggattaaatacaaataagtccctgactctgcacttccgttatcactttagtc 35177505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 549 - 630
Target Start/End: Complemental strand, 5965536 - 5965455
Alignment:
Q  549 cacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||| ||||||||| |||||||||| | ||||||||||||| |||||    ||| ||||||||||||||||||||||||    
T  5965536 cacctcgttgtcacaaatgtccctgactcaggattaaatacaaagaagtctttgactctgcacttccgttatcactttagtc 5965455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 452 - 521
Target Start/End: Original strand, 18896424 - 18896493
Alignment:
Q  452 ttaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    ||||| ||||||||| ||||| || |||||| ||||||||||||||||||||| ||| ||||||||||||    
T  18896424 ttaggcttaattgcagttttggtcccctaagcatcacaatcttgcgattttggtcccctataaaaaacaa 18896493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 35178900 - 35178817
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||| ||||||||| |  ||||||||||| | ||||||||||||| |||||||  | | ||||||||||||||||||||||||    
T  35178900 tgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtccctgattctgcacttccgttatcactttagtc 35178817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 547 - 629
Target Start/End: Complemental strand, 10407680 - 10407598
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagt 629  Q
    |||| ||| |||||||| |||||  ||||||| ||||||| ||||| ||||||  |||| |||||||||||||||||||||||    
T  10407680 tgcagctcactgtcacataggtcattgacttaggattaaacacaaataagtccataactttgcacttccgttatcactttagt 10407598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 518
Target Start/End: Complemental strand, 18896836 - 18896776
Alignment:
Q  458 ttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaa 518  Q
    ||||||||| |||||  ||||||||||||||||||||| |||||||||| | |||||||||    
T  18896836 ttaattgcagttttggcctcctaagtatcacaatcttgtgattttggcctcctataaaaaa 18896776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 547 - 627
Target Start/End: Original strand, 30134593 - 30134673
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcacttta 627  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||| ||||     ||| |||||||| ||||||||||||    
T  30134593 tgcacctcgctgtcacaaaggtcccctactcatgattaaatacaaagaagtgtgtgactctgcacttctgttatcacttta 30134673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 508
Target Start/End: Original strand, 30491635 - 30491695
Alignment:
Q  448 tttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggcccc 508  Q
    ||||||||  |||||| || |||||| | ||||||||||||||||||||||||||||||||    
T  30491635 tttattagacttaattacatttttgaccccctaagtatcacaatcttgcgattttggcccc 30491695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 448 - 507
Target Start/End: Complemental strand, 18896687 - 18896628
Alignment:
Q  448 tttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccc 507  Q
    ||||||||| || |||||| |||||  | |||||||||||||||||||||||||||||||    
T  18896687 tttattaggcttgattgcagttttggccccctaagtatcacaatcttgcgattttggccc 18896628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 547 - 628
Target Start/End: Complemental strand, 41754891 - 41754810
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttag 628  Q
    ||||||||||||||||| || || |||||| | ||||||||||||| |||| ||  ||| | |||||||||||| |||||||    
T  41754891 tgcacctcgctgtcacatagatctctgactcaggattaaatacaaacaagttcctgactctacacttccgttattactttag 41754810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 453 - 521
Target Start/End: Complemental strand, 30491895 - 30491827
Alignment:
Q  453 taggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    |||| ||||||||| |||||| | | ||||||||| ||||||||||||||| |||  ||||||||||||    
T  30491895 taggcttaattgcagttttgaccccataagtatcataatcttgcgattttgaccctctataaaaaacaa 30491827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 559 - 630
Target Start/End: Original strand, 28619028 - 28619099
Alignment:
Q  559 tcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||||||||||||||  ||||||||||||||| || ||    ||| ||||||| ||||||||||||||||    
T  28619028 tcacaaaggtccctgacccatgattaaatacaaagaaatcattgactctgcactttcgttatcactttagtc 28619099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 598
Target Start/End: Original strand, 33314888 - 33314939
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtc 598  Q
    |||||||||||||| |||||||| |||||| | ||||||||||||| |||||    
T  33314888 tgcacctcgctgtctcaaaggtctctgactcaagattaaatacaaataagtc 33314939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 478 - 508
Target Start/End: Complemental strand, 4830415 - 4830385
Alignment:
Q  478 ctaagtatcacaatcttgcgattttggcccc 508  Q
    |||||||||||||||||||||||||||||||    
T  4830415 ctaagtatcacaatcttgcgattttggcccc 4830385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 508
Target Start/End: Original strand, 29919078 - 29919128
Alignment:
Q  458 ttaattgcaattttgatctcctaagtatcacaatcttgcgattttggcccc 508  Q
    ||||| ||| |||||| | |||||||||||| |||||||||||||||||||    
T  29919078 ttaatagcagttttgaccccctaagtatcacgatcttgcgattttggcccc 29919128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 600
Target Start/End: Original strand, 41754025 - 41754078
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccc 600  Q
    ||||||| ||||||||| |||||||||||| | ||||||||| ||| |||||||    
T  41754025 tgcaccttgctgtcacataggtccctgactcaggattaaatataaacaagtccc 41754078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 502
Target Start/End: Original strand, 11873516 - 11873560
Alignment:
Q  458 ttaattgcaattttgatctcctaagtatcacaatcttgcgatttt 502  Q
    ||||||||| |||||  ||||||| ||||||||||||||||||||    
T  11873516 ttaattgcagttttggcctcctaaatatcacaatcttgcgatttt 11873560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 553 - 625
Target Start/End: Original strand, 41121142 - 41121214
Alignment:
Q  553 tcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactt 625  Q
    ||||||||  ||||||  |||||| ||||||||||||||| ||||| |  ||||||||||||  |||||||||    
T  41121142 tcgctgtcttaaaggttactgactcatgattaaatacaaagaagtctctgactatgcacttctattatcactt 41121214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 20464096 - 20464179
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||| ||||||||||||||||| || ||||||||||||||| |||||||  ||| |||||||| |||||||||||||||    
T  20464096 tgcacctcgttgtcacaaaggtccctggctcatgattaaatacaaagaagtccctgactctgcacttctgttatcactttagtc 20464179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 17700545 - 17700628
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||| ||||||| |||| ||||||| | ||||||||||||| |||||||  ||| ||||||||||||||||||||||||    
T  17700545 tgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttagtc 17700628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 17702015 - 17701932
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||||| | |||||||||||| | ||||||||||||| |||||||  ||| ||||||||||||||||||||||||    
T  17702015 tgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatcactttagtc 17701932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 19114560 - 19114643
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||| ||| ||||||| |||||||||||| | ||||||||||||| ||||| | |||| ||||||||||||||||||||||||    
T  19114560 tgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtcactaactttgcacttccgttatcactttagtc 19114643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 448 - 508
Target Start/End: Original strand, 36618738 - 36618798
Alignment:
Q  448 tttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggcccc 508  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||||||||||| ||||    
T  36618738 tttattaggtttaattgcaattttggtcacataagtatcacaatcttgcgattttgccccc 36618798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 552 - 630
Target Start/End: Complemental strand, 11773142 - 11773064
Alignment:
Q  552 ctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||||||||| |||||||||||| | ||||||||||||| ||||| |  ||| | ||||||||||||||||||||||    
T  11773142 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtctctgactctacacttccgttatcactttagtc 11773064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 2592103 - 2592020
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||||||| |||||||||||| | ||||||||||||| |||||||  |||    |||||||||||||||||||||    
T  2592103 tgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactcaatacttccgttatcactttagtc 2592020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 551 - 630
Target Start/End: Complemental strand, 45601030 - 45600952
Alignment:
Q  551 cctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||| |||||||||| | | ||||||||||||| |||| ||  ||| ||||||||||||||||||||||||    
T  45601030 cctcgctgtcacataggtccctgattcaggattaaatacaaagaagt-cctgactctgcacttccgttatcactttagtc 45600952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 48573012 - 48573095
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||| | ||||| |||||||||||| | ||||||||||||| ||| | |  ||| ||||||||||||||||||||||||    
T  48573012 tgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgcacttccgttatcactttagtc 48573095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 630
Target Start/End: Complemental strand, 53959187 - 53959113
Alignment:
Q  556 ctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||||| ||||| |||||| ||||||||||||||| |||| |   ||| ||||||||||||||||||||||||    
T  53959187 ctgtcacataggtctctgactcatgattaaatacaaataagttcatgactctgcacttccgttatcactttagtc 53959113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 565 - 630
Target Start/End: Complemental strand, 48574537 - 48574472
Alignment:
Q  565 aggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||||||||| | ||||||||||||| |||||||  ||| ||||||| ||||||||||||||||    
T  48574537 aggtccctgactcaggattaaatacaaataagtccctgactctgcactttcgttatcactttagtc 48574472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 518
Target Start/End: Original strand, 23564121 - 23564185
Alignment:
Q  454 aggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaa 518  Q
    ||||||||||| | |||||| |  ||||||||||||||||||||||||||||| | |||||||||    
T  23564121 aggtttaattgtagttttgaccctctaagtatcacaatcttgcgattttggcctcctataaaaaa 23564185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 555 - 630
Target Start/End: Original strand, 2591662 - 2591737
Alignment:
Q  555 gctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||| |||||||||||| | ||||||||||||| ||||| |  ||| ||||||||| | ||||||||||||    
T  2591662 gctgtcacataggtccctgactcaggattaaatacaaacaagtctctgactctgcacttccatgatcactttagtc 2591737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 517
Target Start/End: Complemental strand, 29070233 - 29070174
Alignment:
Q  458 ttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaa 517  Q
    ||||||||| |||||  ||||||||||| |||||||||| |||||||||||||| |||||    
T  29070233 ttaattgcagttttggcctcctaagtattacaatcttgcaattttggccccataaaaaaa 29070174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 33428531 - 33428448
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||| ||||||| |||||||||||| |  |||||||||||| ||||||   ||| |||| ||||||| |||||||||||    
T  33428531 tgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtccttgactctgcatttccgttgtcactttagtc 33428448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 48808393 - 48808476
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||| | | ||||| |||||| | ||||||||||||| |||| || |||| |||||||||||| |||||||||||    
T  48808393 tgcagctcgctgttagataggtctctgactcaggattaaatacaaataagttcctaactctgcacttccgttgtcactttagtc 48808476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 478 - 517
Target Start/End: Original strand, 49261977 - 49262016
Alignment:
Q  478 ctaagtatcacaatcttgcgattttggccccatataaaaa 517  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  49261977 ctaagtatcacaatcttgcgattttggccccctataaaaa 49262016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 52317006 - 52317089
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||||| | ||||| |||||| ||||||||||||||| |||||   |||| ||||| |||||||||| |||||||    
T  52317006 tgcagctcgctgtcatataggtctctgactcatgattaaatacaaataagtctttaactctgcacctccgttatcattttagtc 52317089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 52318413 - 52318330
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||| ||||||||||| || ||||||||| | ||||||||||||| |||||||  ||| |||||||| | ||| |||||||||    
T  52318413 tgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtccctgactctgcacttctgatattactttagtc 52318330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 55389565 - 55389482
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||| |||||  ||||| |  |||||||||||  |||||||  ||| | ||||||||||||||||||||||    
T  55389565 tgcacctcgctgtcacataggtcattgactcaaaattaaatacaattaagtccctgactctacacttccgttatcactttagtc 55389482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 518
Target Start/End: Complemental strand, 30889475 - 30889409
Alignment:
Q  452 ttaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaa 518  Q
    ||||||||||||||| ||||||   |||| |||||||||||||| |||| ||||||| |||||||||    
T  30889475 ttaggtttaattgcagttttgacaccctatgtatcacaatcttgtgattctggccccctataaaaaa 30889409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 630
Target Start/End: Original strand, 36278984 - 36279062
Alignment:
Q  552 ctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| ||||||| |||||||||| | | ||||||||||||| ||||| |  ||| |||||||||||||||| |||||||    
T  36278984 ctcgttgtcacataggtccctgattcaggattaaatacaaataagtctctgactctgcacttccgttatcattttagtc 36279062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 476 - 521
Target Start/End: Original strand, 30889093 - 30889138
Alignment:
Q  476 tcctaagtatcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    |||||||| ||||| |||||||||||||||||| ||||||||||||    
T  30889093 tcctaagtgtcacagtcttgcgattttggccccctataaaaaacaa 30889138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 518
Target Start/End: Original strand, 29069821 - 29069880
Alignment:
Q  458 ttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaa 518  Q
    |||||||||| ||||| ||||||| |||||||||||| |||||||| |||| |||||||||    
T  29069821 ttaattgcaactttga-ctcctaactatcacaatcttacgattttgaccccctataaaaaa 29069880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 627
Target Start/End: Original strand, 34263832 - 34263912
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcacttta 627  Q
    ||||||||||||||||| |||||| ||| | | ||||||||||||| ||||| |  ||| | ||||||| |||||||||||    
T  34263832 tgcacctcgctgtcacagaggtccttgattcaggattaaatacaaataagtctctgactctacacttccattatcacttta 34263912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 619
Target Start/End: Original strand, 47427887 - 47427959
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgtta 619  Q
    ||||||||||||||||| |||||| ||||| |  |||||||||||| |||||||  ||| ||||||| |||||    
T  47427887 tgcacctcgctgtcacataggtccttgactcaaaattaaatacaaagaagtccctgactgtgcacttacgtta 47427959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 559 - 630
Target Start/End: Complemental strand, 36280401 - 36280330
Alignment:
Q  559 tcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||| ||||| |||||| | ||||||||| ||| ||||| |  ||| ||||||||||||||||||||||||    
T  36280401 tcacataggtctctgactcaggattaaatataaataagtctctgactctgcacttccgttatcactttagtc 36280330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 517
Target Start/End: Complemental strand, 36618991 - 36618932
Alignment:
Q  458 ttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaa 517  Q
    |||||| || |||||||| ||||||||||| ||||||| ||||||| |||| ||||||||    
T  36618991 ttaattacagttttgatcccctaagtatcataatcttgtgattttgaccccctataaaaa 36618932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 47075447 - 47075364
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||| ||||||| |||||| | ||| | ||||||||||||| ||  |||  ||| | ||||||||||||||||||||||    
T  47075447 tgcacctcgttgtcacataggtccgtcactcaagattaaatacaaagaaacccctgactctacacttccgttatcactttagtc 47075364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 557 - 630
Target Start/End: Complemental strand, 49261620 - 49261550
Alignment:
Q  557 tgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||| |||||||||||| | ||||||||||   |||||| | |||| |||| |||||||||||||||||||    
T  49261620 tgtcacataggtccctgactcaggattaaatac---aaagtctctaactctgcatttccgttatcactttagtc 49261550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 55388100 - 55388183
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||||| | ||||| |||||| | ||||||||||||| ||||  |  ||| |||||| |||||||||||||||||    
T  55388100 tgcagctcgctgtcatataggtctctgactcaggattaaatacaaataagttactgactctgcactcccgttatcactttagtc 55388183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 521
Target Start/End: Original strand, 52417867 - 52417933
Alignment:
Q  455 ggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    |||||||||||| |||||  |||||||||||||||| |||| |||||||| | |  |||||||||||    
T  52417867 ggtttaattgcagttttgccctcctaagtatcacaaccttgtgattttggtctccaataaaaaacaa 52417933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 592
Target Start/End: Original strand, 19331135 - 19331180
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaa 592  Q
    ||||||| ||||||||| |||||||||||| | |||||||||||||    
T  19331135 tgcaccttgctgtcacataggtccctgactcaggattaaatacaaa 19331180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 627
Target Start/End: Original strand, 3671065 - 3671145
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcacttta 627  Q
    |||||||| || ||||||||||| |||||| |  |||||||||||| |||||    ||| | |||||||||||||||||||    
T  3671065 tgcacctctctatcacaaaggtctctgactcagaattaaatacaaataagtctatgactctccacttccgttatcacttta 3671145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 508
Target Start/End: Original strand, 29069985 - 29070045
Alignment:
Q  448 tttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggcccc 508  Q
    ||||||| |||||||| ||||||||  |   |||||||||||||||||| |||||||||||    
T  29069985 tttattacgtttaattacaattttggcccattaagtatcacaatcttgcaattttggcccc 29070045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 31091623 - 31091540
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||| ||||||||| |||||||||||| | ||||||||||||| |||||||  ||| ||||||||||||||||||||||||    
T  31091623 tgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttagtc 31091540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 32766335 - 32766252
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||| ||||||| |||||||||||| | ||||||||||||| |||||||  ||| ||||||||||||||||||||||||    
T  32766335 tgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttagtc 32766252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 565 - 630
Target Start/End: Original strand, 14704051 - 14704116
Alignment:
Q  565 aggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||||||||| | ||||||||||||| |||||||  ||| ||||||||||||||||||||||||    
T  14704051 aggtccctgactcaggattaaatacaaataagtccctcactctgcacttccgttatcactttagtc 14704116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 17330326 - 17330243
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| ||| |||||||| |||||||||||| | ||||||||||||| ||||| |  ||| |||| |||||||||||||||||||    
T  17330326 tgcagctcactgtcacataggtccctgactcaggattaaatacaaataagtctctgactctgcatttccgttatcactttagtc 17330243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 17466924 - 17466841
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||| | | | |||||| | ||||||||||||| ||||| |  ||| ||||||||||||||||||||||||    
T  17466924 tgcacctcgctgtcacataagccgctgactcaggattaaatacaaagaagtctctgactctgcacttccgttatcactttagtc 17466841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 552 - 630
Target Start/End: Original strand, 33161799 - 33161877
Alignment:
Q  552 ctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| ||||||||||||| ||| |||| |||||||| |||| ||||| |  |||||| |||||||||||||||||||||    
T  33161799 ctcgttgtcacaaaggtctctgccttaggattaaatgcaaagaagtctcagactatgtacttccgttatcactttagtc 33161877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 547 - 627
Target Start/End: Complemental strand, 40000430 - 40000350
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcacttta 627  Q
    ||||||||||||| ||| || ||||||| | | ||||||||||||| ||||| | |||  |||||||||||||||||||||    
T  40000430 tgcacctcgctgttacatagatccctgattgaggattaaatacaaataagtctctaaccctgcacttccgttatcacttta 40000350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 565 - 627
Target Start/End: Original strand, 32764983 - 32765045
Alignment:
Q  565 aggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcacttta 627  Q
    ||||| |||||| | ||||||||||||| |||||||  ||| |||||||||||||||||||||    
T  32764983 aggtctctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcacttta 32765045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 518
Target Start/End: Complemental strand, 38258825 - 38258783
Alignment:
Q  476 tcctaagtatcacaatcttgcgattttggccccatataaaaaa 518  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  38258825 tcctaagtatcacaatcttgcgattttggccccctgtaaaaaa 38258783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 557 - 629
Target Start/End: Complemental strand, 21733860 - 21733785
Alignment:
Q  557 tgtcacaaaggtccctgacttat---gattaaatacaaaaaagtccccaactatgcacttccgttatcactttagt 629  Q
    |||||||||||||||||||| ||   ||||||||||||| ||||| |  ||| ||||||||||| |||||||||||    
T  21733860 tgtcacaaaggtccctgactcatcatgattaaatacaaataagtctctgactctgcacttccgtcatcactttagt 21733785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 557 - 630
Target Start/End: Original strand, 38853792 - 38853865
Alignment:
Q  557 tgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||| ||||||| |||||| | |||||||||||||  |||||| || | |||||||||||||||| |||||||    
T  38853792 tgtcataaaggtctctgactcaggattaaatacaaagtagtccctaaatgtgcacttccgttatcaatttagtc 38853865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 2910127 - 2910210
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||||||| || |||||||||   ||||||||||||| ||||| |  ||| ||||||||| || |||||||||||    
T  2910127 tgcagctcgctgtcacatagatccctgactcgggattaaatacaaataagtctctgactctgcacttcctttgtcactttagtc 2910210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 24459542 - 24459459
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||||||| |||||||||| | | ||||||||||||| ||||| |  ||  ||||||||  ||||||||||||||    
T  24459542 tgcatctcgctgtcacataggtccctgaatcaggattaaatacaaataagtctctgaccctgcacttctattatcactttagtc 24459459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 31090191 - 31090274
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||||||| |||||| ||||| | ||||||||| ||| ||||| |  ||| |||||||||||||| | |||||||    
T  31090191 tgcagctcgctgtcacataggtccttgactcaggattaaatataaataagtctctgactctgcacttccgttatgattttagtc 31090274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 34582766 - 34582683
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||| ||||| |||||||||  |||||   |||||||||||||  ||||||  | | ||||||||||||||||||||||||    
T  34582766 tgcaccttgctgttacaaaggtcattgactcgggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagtc 34582683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 629
Target Start/End: Complemental strand, 34037769 - 34037687
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagt 629  Q
    ||||||| ||||||| |||||||| | ||| | ||||||||||||| |||||    ||| |||||||| ||||||||||||||    
T  34037769 tgcaccttgctgtcataaaggtccataactcaggattaaatacaaataagtctatgactctgcacttctgttatcactttagt 34037687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 448 - 506
Target Start/End: Original strand, 43519263 - 43519320
Alignment:
Q  448 tttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggcc 506  Q
    ||||||||||||||||||| |||||| |  | ||||||||||||||| |||||||||||    
T  43519263 tttattaggtttaattgcagttttgaccctc-aagtatcacaatcttacgattttggcc 43519320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 630
Target Start/End: Original strand, 24458085 - 24458170
Alignment:
Q  545 tatgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||| |||||| ||||| |||||||||||| |  |||||||||||| ||||  |  ||| | ||||| ||||||||||||||||    
T  24458085 tatgcagctcgctatcacataggtccctgactcaaaattaaatacaaataagtttctgactctacactttcgttatcactttagtc 24458170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 630
Target Start/End: Complemental strand, 38985051 - 38985002
Alignment:
Q  581 attaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||||||||| ||||||   ||| ||||||||||||||||||||||||    
T  38985051 attaaatacaaagaagtccttgactctgcacttccgttatcactttagtc 38985002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 623
Target Start/End: Complemental strand, 5915088 - 5915012
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcac 623  Q
    ||||||||||| ||| | |||||  ||||| |  |||||||||||| ||||| | |||| |||||||||||||||||    
T  5915088 tgcacctcgctttcaaataggtctttgactcagaattaaatacaaagaagtcactaactctgcacttccgttatcac 5915012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 504
Target Start/End: Original strand, 38258605 - 38258641
Alignment:
Q  468 ttttgatctcctaagtatcacaatcttgcgattttgg 504  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  38258605 ttttggtctcctaagtatcacaatctttcgattttgg 38258641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 7945650 - 7945567
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||| |||| ||||||| | ||||||||||||| ||||| |  ||||||||||||||||||||||||||||    
T  7945650 tgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcacttccgttatcactttagtc 7945567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 5782441 - 5782524
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||| ||||| |  | ||||||||||| ||||||||||||||    
T  5782441 tgcacctcgctgtcacataggtctctgactcatgattaaatacaaagaagtctctgattatgcacttcccttatcactttagtc 5782524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 9339673 - 9339756
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||| ||| ||| |||||||||||| | ||||||||||||| || ||||| ||| ||||||||||||||||||||||||    
T  9339673 tgcagctcgttgttacataggtccctgactcaggattaaatacaaataaatccccgactctgcacttccgttatcactttagtc 9339756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 32665866 - 32665783
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||||||| ||||| |||||| ||||||||||||||| |||||    ||| ||||||||||||||||||||||||    
T  32665866 tgcagctcgctgtcacataggtctctgactcatgattaaatacaaataagtctttgactctgcacttccgttatcactttagtc 32665783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 451 - 518
Target Start/End: Complemental strand, 35820170 - 35820103
Alignment:
Q  451 attaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaa 518  Q
    |||||| ||||||||| |||||  | |||||||||||||||||||||||||||||||| |||||||||    
T  35820170 attaggcttaattgcagttttggccccctaagtatcacaatcttgcgattttggccccctataaaaaa 35820103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 630
Target Start/End: Complemental strand, 11060882 - 11060797
Alignment:
Q  545 tatgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||||||||||||||||||||||| ||||| |  ||||||||||||| ||||||  | |  |||||| ||||||||||||||||    
T  11060882 tatgcacctcgctgtcacaaaggtccatgactcaaaattaaatacaaaatagtccctgaatgggcactttcgttatcactttagtc 11060797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 10333282 - 10333199
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||| ||| ||||| |||||| | ||||||||||||| ||||| |  ||| ||||||||||||||||||||||||    
T  10333282 tgcagctcgctgttacataggtctctgactcaagattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 10333199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 630
Target Start/End: Original strand, 8975155 - 8975269
Alignment:
Q  520 aagagtcaatggtcactttagtccata----tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttcc 615  Q
    |||||| |||||||||||| |||| ||    ||||||| | |||||||||||||||||||| | ||||||||| |||  |||||   | ||||||||| |    
T  8975155 aagagtaaatggtcactttggtccctaactttgcaccttgttgtcacaaaggtccctgactcaagattaaatataaagtagtccatgaatatgcactttc 8975254  T
Q  616 gttatcactttagtc 630  Q
    |||||||||||||||    
T  8975255 gttatcactttagtc 8975269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 547 - 627
Target Start/End: Original strand, 6612446 - 6612526
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcacttta 627  Q
    ||||||||||||| | ||| ||| |||||| ||||||||||||||| ||||| |  ||| ||||||||| |||||||||||    
T  6612446 tgcacctcgctgttataaatgtctctgactcatgattaaatacaaacaagtctctgactctgcacttccattatcacttta 6612526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 5783205 - 5783122
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||| || |||  |||| |  |||||||||||| ||||||   ||| ||||||||||||||||||||||||    
T  5783205 tgcacctcgctgtcacatagatcctcgactcagaattaaatacaaagaagtccatgactctgcacttccgttatcactttagtc 5783122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 7944182 - 7944265
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||||||| |||||||||||| |  |||||||||||| ||||||   ||| ||||||| |||||||| |||||||    
T  7944182 tgcaactcgctgtcacataggtccctgactcaaaattaaatacaaataagtccttgactctgcactttcgttatcaatttagtc 7944265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 559 - 630
Target Start/End: Complemental strand, 9341109 - 9341038
Alignment:
Q  559 tcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||| |||||||||||| | ||||||||||||| ||||| |  ||| |||||||| |||||||||||||||    
T  9341109 tcacataggtccctgactcaggattaaatacaaataagtctctgactttgcacttctgttatcactttagtc 9341038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 10333013 - 10333096
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||| ||||||| |||||| ||| | | ||||||||| ||| |||||||  ||| |||||||||||||||| |||||||    
T  10333013 tgcacctcgttgtcacataggtccttgattcaggattaaatataaataagtcccttactctgcacttccgttatcattttagtc 10333096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 22856707 - 22856790
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||| || ||| |||||| | | ||||| | ||||||||||||| ||||| | |||| ||||||||||||||||||||||||    
T  22856707 tgcaccacgttgttacaaagattcttgactcaggattaaatacaaagaagtctctaactctgcacttccgttatcactttagtc 22856790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 52440655 - 52440572
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||| ||||||||||| |||||||||| | | ||||||||| ||| ||||| |  ||| ||||||||| ||||||||||||||    
T  52440655 tgcacatcgctgtcacataggtccctgagtcaggattaaatataaataagtctctgactctgcacttccattatcactttagtc 52440572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 518
Target Start/End: Complemental strand, 7750723 - 7750653
Alignment:
Q  448 tttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaa 518  Q
    ||||||||||||||||||| |||||| | | ||||||| | |||||| ||||||||||||| || ||||||    
T  7750723 tttattaggtttaattgcagttttgaccccataagtattataatcttacgattttggccccctacaaaaaa 7750653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 453 - 521
Target Start/End: Original strand, 23395111 - 23395178
Alignment:
Q  453 taggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    |||| ||||||| | ||||| || ||||||||||||||||||||||||||| |||| ||||| ||||||    
T  23395111 taggcttaattgtagttttggtcccctaagtatcacaatcttgcgattttgacccc-tataagaaacaa 23395178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 521
Target Start/End: Original strand, 35819807 - 35819851
Alignment:
Q  477 cctaagtatcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    ||||||||||||||||||||||||||| | || ||||||||||||    
T  35819807 cctaagtatcacaatcttgcgattttgccaccctataaaaaacaa 35819851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 567 - 629
Target Start/End: Original strand, 25037925 - 25037987
Alignment:
Q  567 gtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagt 629  Q
    |||||||||| ||||||||||||||| ||||| |  ||| || |||| |||||||||||||||    
T  25037925 gtccctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcactttagt 25037987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 567 - 629
Target Start/End: Original strand, 25043137 - 25043199
Alignment:
Q  567 gtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagt 629  Q
    |||||||||| ||||||||||||||| ||||| |  ||| || |||| |||||||||||||||    
T  25043137 gtccctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcactttagt 25043199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 628
Target Start/End: Original strand, 3117688 - 3117757
Alignment:
Q  559 tcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttag 628  Q
    ||||||||||| |||||| | ||||||||||||| || || |  ||| | ||||||||||||||||||||    
T  3117688 tcacaaaggtctctgactcaagattaaatacaaagaaatctctgactctccacttccgttatcactttag 3117757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 545 - 629
Target Start/End: Original strand, 8074476 - 8074560
Alignment:
Q  545 tatgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagt 629  Q
    |||||| |||||||||||| | |||||||||| | ||||||||||||| |||||||  ||| |||||||||||||||||||||||    
T  8074476 tatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttagt 8074560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 2464696 - 2464779
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||||| | |||||| ||||| ||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||    
T  2464696 tgcagctcgctgtcatataggtccatgactcatgattaaatacaaataagtccctaactctgcacttacgttatcactttagtc 2464779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 28591210 - 28591127
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||| |||||||||||| | ||||||||||||| || ||||  ||| ||||||||| ||||||||||||||    
T  28591210 tgcacctcgctgtcacataggtccctgactcaggattaaatacaaataaatccctgactctgcacttcctttatcactttagtc 28591127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 552 - 630
Target Start/End: Original strand, 4592893 - 4592971
Alignment:
Q  552 ctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||||||||| | |||||||||| | ||||||||||||| |||||||  ||| ||||||||||||||||||||||||    
T  4592893 ctcgctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatcactttagtc 4592971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 546132 - 546049
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||||||||||| |||||||||||| | ||||||||||| | ||||||   ||| ||||||||||||||||||||||||    
T  546132 tgcagctcgctgtcacataggtccctgactcaggattaaatacagataagtccttgactctgcacttccgttatcactttagtc 546049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 19182977 - 19183060
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||| ||||| |||||| | ||||||||||||| |||| ||  ||| | ||||||||||||||||||||||    
T  19182977 tgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagttcctgactctacacttccgttatcactttagtc 19183060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 549 - 630
Target Start/End: Original strand, 16611757 - 16611838
Alignment:
Q  549 cacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||| ||||| |||||| | ||||||||||||| ||| | |  | ||||||||||||||||||||||||||    
T  16611757 cacctcgctgtcacataggtctctgactcaggattaaatacaaagaagcctctgattatgcacttccgttatcactttagtc 16611838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 2466870 - 2466787
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||| ||||| |||||  ||| | | ||||||||| ||| ||||||| |||| ||||||||||||||||||||||||    
T  2466870 tgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtccctaactctgcacttccgttatcactttagtc 2466787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 558 - 630
Target Start/End: Complemental strand, 19186305 - 19186233
Alignment:
Q  558 gtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||| |||||||||||||| ||||||||||||| ||||| |  ||| | || |||||||||||||||||||    
T  19186305 gtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacatttccgttatcactttagtc 19186233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 521
Target Start/End: Original strand, 5003498 - 5003561
Alignment:
Q  458 ttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    ||||||||| ||||| ||  ||||||||||||||||||||||||||  ||| ||||||||||||    
T  5003498 ttaattgcagttttggtcctctaagtatcacaatcttgcgattttgatcccttataaaaaacaa 5003561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 9537050 - 9537132
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||| ||||| ||||||||  |||||||||||| |||||   | || ||||||||| ||||||||||||||    
T  9537050 tgcacctcgctgtcacataggtctctgacttagaattaaatacaaagaagtcatga-ctgtgcacttccattatcactttagtc 9537132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 521
Target Start/End: Original strand, 16185190 - 16185252
Alignment:
Q  458 ttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    ||||||||| |||||  |||| ||||||||||||||||||||||| ||||| ||||||||||||    
T  16185190 ttaattgca-ttttggcctccaaagtatcacaatcttgcgattttagccccgtataaaaaacaa 16185252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 448 - 503
Target Start/End: Complemental strand, 16185442 - 16185387
Alignment:
Q  448 tttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttg 503  Q
    |||||||||||||||||| ||||||  ||||||||||||||||| ||| |||||||    
T  16185442 tttattaggtttaattgcgattttgtgctcctaagtatcacaattttgtgattttg 16185387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 457 - 518
Target Start/End: Complemental strand, 17483575 - 17483514
Alignment:
Q  457 tttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaa 518  Q
    ||||||||||||||||| |  ||| |||||||||||||||||||| | || |||||||||||    
T  17483575 tttaattgcaattttgaccctctatgtatcacaatcttgcgatttcgacctcatataaaaaa 17483514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 508
Target Start/End: Original strand, 17483327 - 17483387
Alignment:
Q  448 tttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggcccc 508  Q
    |||||||| |||||||||| |||||  | | |||||||||||||||| |||||||||||||    
T  17483327 tttattagatttaattgcagttttgtacccttaagtatcacaatcttacgattttggcccc 17483387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 627
Target Start/End: Original strand, 21069316 - 21069396
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcacttta 627  Q
    ||||||||| ||||||| ||||| |||||| | ||||||||||||| ||||||   ||| |||||||| ||| ||||||||    
T  21069316 tgcacctcgttgtcacagaggtctctgactcaggattaaatacaaataagtccttgactctgcacttctgttttcacttta 21069396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 627
Target Start/End: Original strand, 25590458 - 25590537
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcacttta 627  Q
    ||||||||||||||||| ||||||||||| |  ||||||||||||| ||||| |  | | |||||||| ||||||||||||    
T  25590458 tgcacctcgctgtcacataggtccctgac-tcggattaaatacaaataagtctctgattctgcacttctgttatcacttta 25590537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 9538145 - 9538062
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||| |||| ||||| | |||||||||||| | ||||||||||||| ||||| |  | | |||||||||||||||| |||||||    
T  9538145 tgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctgattgtgcacttccgttatcattttagtc 9538062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 521
Target Start/End: Original strand, 16644978 - 16645041
Alignment:
Q  458 ttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    ||||||||| |||||| | | ||||||||||||| |||||||||| | ||| ||||||||||||    
T  16644978 ttaattgcagttttgaccccttaagtatcacaattttgcgattttagtcccctataaaaaacaa 16645041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 32640315 - 32640398
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    |||||||| |||||||| ||| || | ||| | ||||||||||||| ||||||| |||| |  ||||| |||||||||||||||    
T  32640315 tgcacctcactgtcacataggaccataactcaggattaaatacaaataagtccctaactctaaacttctgttatcactttagtc 32640398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 14891239 - 14891160
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||| ||||| |||||| |||||||||| |    ||||| |  ||| | ||||||||||||||||||||||    
T  14891239 tgcacctcgctgtcacataggtctctgactcatgattaaatgc----aagtctctgactctacacttccgttatcactttagtc 14891160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 517
Target Start/End: Original strand, 5003660 - 5003729
Alignment:
Q  448 tttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaa 517  Q
    ||||||||| ||||||||| | ||   | ||||||||||| |||||||||||||||||||| || |||||    
T  5003660 tttattaggcttaattgcagtcttagccccctaagtatcataatcttgcgattttggccccctaaaaaaa 5003729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 477 - 521
Target Start/End: Complemental strand, 29028019 - 29027975
Alignment:
Q  477 cctaagtatcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    |||||||||||||| |||| |||||| ||||| ||||||||||||    
T  29028019 cctaagtatcacaaacttgtgattttagccccctataaaaaacaa 29027975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 30748026 - 30748109
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| ||||| |  ||| | ||||| ||||||||||||||||    
T  30748026 tgcacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacactttcgttatcactttagtc 30748109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 547 - 627
Target Start/End: Original strand, 31218982 - 31219062
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcacttta 627  Q
    ||||||||||||||||| |||||| | ||| | ||||||||||||| |||| ||  ||| |||||||||||||||||||||    
T  31218982 tgcacctcgctgtcacataggtccttaactcaggattaaatacaaagaagttcctgactctgcacttccgttatcacttta 31219062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 553 - 598
Target Start/End: Complemental strand, 6468871 - 6468826
Alignment:
Q  553 tcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtc 598  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||    
T  6468871 tcgctgtcacaaaggtccctgactcatgattaaatacaaaatagtc 6468826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 508
Target Start/End: Original strand, 8382260 - 8382291
Alignment:
Q  477 cctaagtatcacaatcttgcgattttggcccc 508  Q
    ||||||||||||||||||||||||||||||||    
T  8382260 cctaagtatcacaatcttgcgattttggcccc 8382291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 630
Target Start/End: Complemental strand, 31219256 - 31219173
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||| |||||  | ||| | ||||||||||||| |||| ||  |||   ||||||||||||||||||||||    
T  31219256 tgcacctcgctgtcacataggtcattaactcaggattaaatacaaagaagttcctgactcgacacttccgttatcactttagtc 31219173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 505
Target Start/End: Original strand, 2704560 - 2704617
Alignment:
Q  448 tttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggc 505  Q
    |||| |||||||||||||| |||||||  | ||| ||||||||||| |||||||||||    
T  2704560 tttaataggtttaattgcagttttgattccataaatatcacaatctcgcgattttggc 2704617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 517
Target Start/End: Original strand, 11171460 - 11171528
Alignment:
Q  448 tttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaa 517  Q
    ||||||||||||||||||| ||||   | ||||||||||| |||||||||||| ||||||| || |||||    
T  11171460 tttattaggtttaattgcagtttttccc-cctaagtatcataatcttgcgattctggccccttaaaaaaa 11171528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 500
Target Start/End: Original strand, 1436180 - 1436231
Alignment:
Q  448 tttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgatt 500  Q
    ||||||||| ||||||||| |||||| | |||||||||| |||||||||||||    
T  1436180 tttattaggattaattgcagttttgacc-cctaagtatcgcaatcttgcgatt 1436231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 518
Target Start/End: Original strand, 6063039 - 6063099
Alignment:
Q  458 ttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaa 518  Q
    ||||||||| |||||| ||||||||||||| ||| ||| ||||||||| |  |||||||||    
T  6063039 ttaattgcagttttgacctcctaagtatcataattttgtgattttggctctctataaaaaa 6063099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 477 - 521
Target Start/End: Original strand, 8382094 - 8382138
Alignment:
Q  477 cctaagtatcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    |||||||||||||||||||| ||||||  ||| ||||||||||||    
T  8382094 cctaagtatcacaatcttgcaattttgatcccttataaaaaacaa 8382138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 79100 - 79183
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||||||||||| |||||| ||||| ||||||||||| ||| ||||||   ||| ||||| |||| |||||||||||||    
T  79100 tgcacctcgctgtcacataggtccttgactcatgattaaataaaaagaagtccttgactttgcacctccgatatcactttagtc 79183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 599
Target Start/End: Complemental strand, 74409 - 74357
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtcc 599  Q
    |||| ||| |||||||| |||||||| ||| ||||||||||||||| ||||||    
T  74409 tgcaactcactgtcacataggtccctaactcatgattaaatacaaagaagtcc 74357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 5626 - 5709
Alignment:
Q  547 tgcacctcgctgtcacaaaggtccctgacttatgattaaatacaaaaaagtccccaactatgcacttccgttatcactttagtc 630  Q
    ||||||||| ||| ||||| ||| |||||| |  |||||||||||| |||||||  ||| | ||||||||||||||||||||||    
T  5626 tgcacctcgttgtgacaaatgtctctgactcagaattaaatacaaagaagtccctgactctacacttccgttatcactttagtc 5709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 521
Target Start/End: Original strand, 201310 - 201373
Alignment:
Q  458 ttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||| |||  | ||||||||||    
T  201310 ttaattgcagttttgaccccctaagtatcacaatcttgcgattttgaccctctgtaaaaaacaa 201373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 452 - 517
Target Start/End: Complemental strand, 201732 - 201667
Alignment:
Q  452 ttaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggccccatataaaaa 517  Q
    ||||||||||||||| |||||  | ||||||||||||||||||  |||||| ||||| ||||||||    
T  201732 ttaggtttaattgcagttttggccccctaagtatcacaatcttatgattttagccccctataaaaa 201667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 508
Target Start/End: Original strand, 201471 - 201531
Alignment:
Q  448 tttattaggtttaattgcaattttgatctcctaagtatcacaatcttgcgattttggcccc 508  Q
    ||||||| | ||||||||| |||||  | ||||||| |||||||||||| |||||||||||    
T  201471 tttattatgcttaattgcagttttggccccctaagtttcacaatcttgccattttggcccc 201531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 503
Target Start/End: Original strand, 122416 - 122461
Alignment:
Q  458 ttaattgcaattttgatctcctaagtatcacaatcttgcgattttg 503  Q
    ||||||||| |||||||| | ||||||| |||||||||||||||||    
T  122416 ttaattgcagttttgatcccataagtattacaatcttgcgattttg 122461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 477 - 521
Target Start/End: Original strand, 1906 - 1950
Alignment:
Q  477 cctaagtatcacaatcttgcgattttggccccatataaaaaacaa 521  Q
    |||||||| |||||||||| |||||||| ||| ||||||||||||    
T  1906 cctaagtaacacaatcttgagattttggtcccctataaaaaacaa 1950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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