View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12999_low_23 (Length: 230)
Name: NF12999_low_23
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12999_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 25049195 - 25049392
Alignment:
| Q |
16 |
acagaggaaaaggtgaatgaagttatataataagagagtcacagatacatcaaacagattccaaaaccggttgaaagccacataacac--aattgtgagt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25049195 |
acagaggaaaaggtgaatgaagttatataataagagagtcacagatacatcaaacagattccaaaaccggttgaaagccacataacacaaaattgtgagt |
25049294 |
T |
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| Q |
114 |
aaaagacaaaggaagaaagaagnnnnnnnctcataacatgagagccggtttcacagacggccagaagcaaccattcctaagccggctatatgtaatgt |
211 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25049295 |
aaaagacaaaggaagaaagaagaaaaaaactcataacatgagagccggtttcacagacggccagaagcaaccattcctaagccggctatatgtaatgt |
25049392 |
T |
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