View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12999_low_3 (Length: 500)
Name: NF12999_low_3
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12999_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 12 - 347
Target Start/End: Original strand, 28614682 - 28615017
Alignment:
| Q |
12 |
gccaaagaggaagaaaatataggaacagcattagaccaaatagagtcactggctctggattttggaaagcaactggaatagacaaacagatatattcaaa |
111 |
Q |
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| T |
28614682 |
gccaaagaggaagaaaatataggaacagcgttaggccaaatagagtgactggctctggattctggaaagcaactggaatagacaaagcaatttactcaaa |
28614781 |
T |
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| Q |
112 |
tggaggagaaggaaatgattgtgttggactcnnnnnnncacttgtttactaccgtggtagtgccggaaaaggtaccaaaactgattggatgatgcatgag |
211 |
Q |
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| T |
28614782 |
tggagcagaaggaaatgattgtgttggactcaaaaaaacacttgtttactatcgtggtagtgccggaaaaggcaccaaaactgattggatgatgcatgag |
28614881 |
T |
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| Q |
212 |
tttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaagaatgttgctgattatgctcatgaagctgtaagtaacgtacataagacct |
311 |
Q |
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| T |
28614882 |
tttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaagaatgttgctgattatgctcatgaagctgtaagtaacttacataagacct |
28614981 |
T |
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| Q |
312 |
accaaatttttacaaatttttatgcgacaatatttg |
347 |
Q |
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| T |
28614982 |
accaaatttttacaaatttttatgctacaatatttg |
28615017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 298
Target Start/End: Original strand, 28629207 - 28629493
Alignment:
| Q |
12 |
gccaaagaggaagaaaatataggaacagcattagaccaaatagagtcactggctctggattttggaaagcaactggaatagacaaacagatatattcaaa |
111 |
Q |
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| T |
28629207 |
gccaaagaggaagaaaatataggaacagcgttagaccaaatagagtgactggctctggattctggaaagcaactggaatagacaaagcaatatactcaaa |
28629306 |
T |
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| Q |
112 |
tggaggagaaggaaatgattgtgttggactcnnnnnnncacttgtttactaccgtggtagtgccggaaaaggtaccaaaactgattggatgatgcatgag |
211 |
Q |
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| T |
28629307 |
tggagcagaaggaaatgattgtgttggactcaaaaaaacacttgtttactatcgcggtagtgccggaaaaggcaccaaaactgattggatgatgcatgag |
28629406 |
T |
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| Q |
212 |
tttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaagaatgttgctgattatgctcatgaagctgtaagtaac |
298 |
Q |
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| T |
28629407 |
tttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaggaatgatgctgattatgctcatgaagctgtaagtaac |
28629493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 355 - 482
Target Start/End: Original strand, 28615072 - 28615196
Alignment:
| Q |
355 |
tatgagggtttcatattagatttagatacgatcatgaccggataatgtgttatatgtgagagttatccctcaccttatcaataggttttatagtttgaaa |
454 |
Q |
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| T |
28615072 |
tatgagggtttcatattagatttagatatgat---gaccggataatgtgttatatgtgagagttatccctcaccttatcaataggttttatagtttgaaa |
28615168 |
T |
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| Q |
455 |
ctcaagttatgctatagatatcctaagt |
482 |
Q |
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| T |
28615169 |
ctcaagttatgctatagatatcctaagt |
28615196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 39633497 - 39633562
Alignment:
| Q |
16 |
aagaggaagaaaatataggaacagcattagaccaaatagagtcactggctctggattttggaaagc |
81 |
Q |
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| T |
39633497 |
aagaggaagaaaatataggaacagcataaggcctaatagagtgacaggatctggattttggaaagc |
39633562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 39633633 - 39633697
Alignment:
| Q |
155 |
gtttactaccgtggtagtgccggaaaaggtaccaaaactgattggatgatgcatgagtttcgtct |
219 |
Q |
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| T |
39633633 |
gtttattaccgtggaagtgcagggaaaggcaccaaaactgattggatgatgcatgaatttcgtct |
39633697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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